Results for "pipeline"
Top-level pages
Most Commonly used Awk by Bioinformatician
...ace delimited data. Although you can achieve all its functionality with Perl, awk is simpler in many practical cases. Why awk? You can replace a pipeline of 'stuff | grep | sed | cut....3901 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...010. Full Text Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads....al, Nature Methods 7:909-912, 2010 Full Text [describes Trans-ABySS, a pipeline to use the ABySS parallel ass...3768 days ago
Next generation sequencing in R or bioconductor environment
...hipseq The chipseq package combines a variety of HT-Seq packages to a pipeline for ChIP-Seq data analysis. D...: Documentation ChiPsim: Documentation CSAR: Documentation ChIP-Seq Pipeline: PICS, rGADEM and MotIV (deve...3613 days ago
Commercial and public next-gen-seq (NGS) software
...n capabilities. Can use a hybrid templated/de novo approach. Commercial. Win or Mac OS X.SHORE - SHORE, for Short Read, is a mapping and analysis pipeline for short DNA sequences produ...3507 days ago
Software packages for next gen sequence analysis
...apabilities. Can use a hybrid templated/de novo approach. Commercial. Win or Mac OS X. * SHORE - SHORE, for Short Read, is a mapping and analysis pipeline for short DNA sequences produ...3231 days ago
- ...00 megabytes per second, and can accept streams from standard in and write to standard out, allowing it to be easily dropped into the middle of a pipeline for format conversion. Reform...
2702 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Comprehensive NGS software pipeline for assembly, alignment, vari..., share, or download analysis pipelines for automated and repeatable...RNA/DNA structures) software pipeline; tailored to Oxford Nanopore...genes; easy to integrate into pipeline (Latest Release- July 2015)...2897 days ago
Genome Assembly Tools and Software - PART1 !!
...Reduced Complexity ARC is a pipeline which facilitates iterative,...Post Scaffolding TransPS is a pipeline for post-processing of pre-as...; de novo Transcriptome Assembly pipeline from stranded RNA-Seq reads...used in any stage of an assembly pipeline to automatically break incorr...2674 days ago
- ...a --plasmid runs plasmidSPAdes pipeline for plasmid detection --iont...ename> file with untrusted contigs Pipeline options: --only-error-correc...ct] As you can see this is also a “pipeline” of tools that can be s...
2340 days ago
Single Cell RNAseq data analysis tutorial !!
...://github.com/diazlab/SCell Beta-Poisson model for single-cell RNA-seq data analyses https://github.com/nghiavtr/BPSC Sincera: A Computational Pipeline for Single Cell RNA-Seq Profi...2339 days ago
