Results for "pipeline"

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  • Annotation transfer pipeline MAKER http://gmod.org/wiki/MAKER_Tutorial_2013 #Maker #Annotation #Pipeline

    Tags: Maker, Annotation, Pipeline

    690 days ago

  • RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes

    The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipeline for identifying genomic features (i.e., protein-encoding genes and RNA) and annotating their functions. Recently...

    Tags: Bioinformatics, NGS, Tk, Pipeline, Annotation, Tool, RASTtk

    668 days ago

  • GKNO

    gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html

    Tags: Bioinformatics, GKNO, Pipeline, Tool, Software

    645 days ago

  • TEannot

    We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".  

    Tags: Bioinformatics, Analysis, NGS, TEs, TEannot, REPET, Pipeline, Repeats, Genome

    555 days ago

  • MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation

    MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome assembly and annotation can be obtained with ease. It performed better than de novo assemblers and contig integration software. ...

    Tags: Bioinformatics, CISA, MyPro, Genome, Annotation, Pipeline, Prokaryotes

    436 days ago

  • DIAL

    A computational pipeline for identifying single-base substitutions between two closely related genomes without the help of a reference genome. DIAL works even when the depth of coverage is insufficient for de novo assembly, and it can be extended to determine small insertions/deletions. Our main ...

    Tags: Bioinformatics, DIAL, Mutation, Genome, Reference, Pipeline

    360 days ago

  • Pacbio pipeline http://www.cbcb.umd.edu/software/PBcR/ #Pacbio #Reads #Pipeline

    Tags: Pacbio, Reads, Pipeline

    346 days ago

  • NCBI Prokaryotic Genome Annotation Pipeline

    NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, sma...

    Tags: Bioinformatics, Analysis, Assembly, Genome, Annotation, NCBI, Pipeline, Prokaryotes

    284 days ago

  • TULIP - The Uncorrected Long read Itegration Pipeline

    #Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (European eel) TULIP currently consists of to Perl scripts, tulipseed.perl and tulipbulb.perl. These are very much intended as prototypes, and additional components and/or implementations are likely to follow.&...

    Tags: TULIP, Uncorrected, Long, read, Itegration, Pipeline

    93 days ago

  • dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements

    dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not requ...

    Tags: dnaPipeTE, de-novo, assembly, annotation, Pipeline, Transposable, Elements

    84 days ago