Comment on "REAPR: a universal tool for genome assembly evaluation"
...t;_smalt.bam. This should take about twenty minutes. Finally we can use the smalt mapping, and the perfect mapping to run the reapr pipeline. Run reapr pipeline to get help on how to ru...1300 days ago
Comment on "Coronavirus Resources !"
SARS-CoV-2 SNP Calling pipeline https://github.com/DamienFr/CoV-homoplasy1422 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...igh-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data ge...lls and regions for use in benchmarking and validating variant calling pipelines. Currently, benchmark VCF an...1523 days ago
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Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Molecular Phylogenetics and Evolution https://www.journals.elsevier.com/molecular-phylogenetics-and-evolution accept bioinformatics pipeline. Impact 4.42427 days ago
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Comment on "Structural variation: the hidden genomic treasure"
Hydra-SV The pipeline described below is meant to convey a general approach that they have found to be effective for discovering SV breakpoints with Hydra. However, it shoul...2665 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data http://www.biomedcentral.com/1471-2105/15/280/abstract3511 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms https://peerj.com/articles/431/3511 days ago