Results for "plant and virus miRNA"
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Plant scientists can exploit available 50 plant complete genomic data for their res...r other related projects for understanding the genetic mechanism behind their different traits and molecular evolution. Complete information about these plant...s.org/publications/tpg/articles/6/2/plant...3837 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or mor...nt mappers, create differential gene (miRNA) expression profiles and cluster reads using one of seve...with software such as genome browsers and miRDeep.
2758 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regi...rating the synteny correspondences in Plant...Database. It is intended as an easy-to-use and q...
2679 days ago
- Typically in comparative genomics, we can identify anchors, chain them into syntenic blocks and interpret these blocks as derived from a commo...genomes undergone ancient genome duplications (plant...given the expected depth (quota) along both x- and y...
2458 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" ca...s mediated by its own proteins and does not contribute to the su...anspose the species boundaries and consequently migrate from one...nly due to the historical bias and lack of studies in many taxa. T...database to include Horizontal-Virus...2282 days ago
- Tallymer is based on enhanced suffix arrays. This gives a much larger flexibility concerning the choice of the&...bases. We used it in a variety of applications to study the genomes of maize and other plant...
2259 days ago
UCSC SARS-CoV-2 Genome Browser
The UCSC SARS-CoV-2 Genome Browser (https://genome.ucsc.edu/covid19.html) is an...lar genome-browser visualization tool for this virus, containing many annotation tracks and new features, including conservation with similar viruses, immune epitopes, RT–PCR and s...838 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2077 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene str...ng a similarity-based approach where additional cDNA/EST and/o...popular gene prediction program which is widely used for plant...2029 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pipeline...corporates a de novo phage gene-calling algorithm and assigns putative functions to gene calls using protein-, virus-, and p...1805 days ago
