3905 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant to animal and microbial systems] Sense fro...on reads] Readjoiner: a fast and memory efficient string graph...3742 days ago
Next generation sequencing in R or bioconductor environment
...efficient sequence management and analysis in R. It contains many speed and memory effective string conta...rtracklayer, GenomicFeatures and BSgenome. Compared to t...control, filtering, parsing, and manipulation functionality fo...find the nearest gene, exon, miRNA or custom features such as mo...3587 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger,...ld.de/swift/biolib.is library and a set of script targeted to N...C source/Unix. MAQ - Mapping and Assembly with Qualities (rena...jiangh/SeqMap/) - work like ELand, can do 3 or more bp mismatches...3481 days ago
3458 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad ( Institute of Bioresources and Sustainable Development (...w Delhi National Centre For Plant Genome Research (NCPGR), JNU,...Central Hindi Directorate Chandra Shekhar Azad University of Ag...2533 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes insid...ys, gene regulatory pathways, and signaling pathways. These bio...upporting hiding of cofactors and drawing of chemical structure...PA Data integration platform and manually annotated pathways...2249 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...g allele specific copy number and Loss of Heterozygosity (LOH),...Description: identifies SNPs and INDELs from pooled high-throu...001 genomes project (uses ref plant...CLImAT Description: standalone program; “accurate d...s information from PolyPhen-2 and SIFT Input: tab-delimited with...2871 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as th...ssembler designed to assemble virus genomes that have no repeat s...ler 20160120 – Scalable and Accurate Targeted Gene Assembly...from bulk sequencing of mixed virus samples. TAG 0.91 &ndash...2648 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have o...where "hair" is the character, and "present" and "absent" are its states. cla...ve condition of that character, and to have arisen later in the e...lve the polarity of characters, and w.... Fairly common in certain land plant...2424 days ago