Results for "plots"

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  • Hagfish - assess an assembly through creative use of coverage plots

    Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or identification of structural variation in a genome ...

    Tags: Bioinformatics, Hagfish, Assess, Assembly, Coverage, Plots, NGS, Structure, Variation, SV, Assembly, Genome

    2869 days ago

  • Volcano plots https://biocorecrg.github.io/CRG_RIntroduction/volcano-plots.html #Plots #Volcano

    Tags: Plots, Volcano

    912 days ago

  • Interesting online plots idea https://chart-studio.plotly.com/create/#/ #Plots #Idea #Shiny #Draw

    Tags: Plots, Idea, Shiny, Draw

    84 days ago

  • Circular plots in R

    Circular plots are useful to represent complicated informations. They are used in 2 specific cases: when you have long axis and numerous categories, and when you want to show relationships between elements. The circos gallery displays several examples of circular plots, what give...

    Tags: Circular, plots, R, circlize, Zuguang Gu

    2475 days ago

  • orthodotter: Synteny plots (oxford grid)

    orthodotter -h -------------------------------------------------------------------------------- orthodotter - Plot orthologous genes on an oxford grid. -f <file> : input file, containing orthologous genes, default is stdin species chr-name start end spe...

    Tags: orthodotter, Synteny, plots, oxford, grid

    2424 days ago

  • Generate interactive codon usage plots

    Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo

    Tags: Generate, interactive, codon, usage, plots

    2221 days ago

  • JCVI:Python utility libraries on genome assembly, annotation and comparative genomics

    Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wiki

    Tags: JCVI, Python, utility, libraries, genome, assembly, annotation, comparative, genomics, synteny, plots

    1473 days ago

  • VolcaNoseR - Exploring volcano plots

    Plot volcano plots online .... VolcaNoseR - Exploring volcano plots

    Tags: VolcaNoseR, Exploring, volcano, plots

    910 days ago

  • Upset plots !

    Upset plots are a type of visualization used to analyze the intersection of sets or categories. They are particularly useful for displaying data with multiple categories and analyzing their overlaps. In an upset plot, each row represents a category or set, and each column represents a data point...

    Tags: upset, plots, tools, draw, union, intersect

    370 days ago