Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in quality control of de novo genome assembly or identification of structural variation in a genome ...Tags: Bioinformatics, Hagfish, Assess, Assembly, Coverage, Plots, NGS, Structure, Variation, SV, Assembly, Genome
2869 days ago
Tags: Circular, plots, R, circlize, Zuguang Gu
2475 days ago
orthodotter: Synteny plots (oxford grid)
orthodotter -h -------------------------------------------------------------------------------- orthodotter - Plot orthologous genes on an oxford grid. -f <file> : input file, containing orthologous genes, default is stdin species chr-name start end spe...Tags: orthodotter, Synteny, plots, oxford, grid
2424 days ago
Generate interactive codon usage plots
Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demoTags: Generate, interactive, codon, usage, plots
2221 days ago
JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wikiTags: JCVI, Python, utility, libraries, genome, assembly, annotation, comparative, genomics, synteny, plots
1473 days ago
VolcaNoseR - Exploring volcano plots
Plot volcano plots online .... VolcaNoseR - Exploring volcano plotsTags: VolcaNoseR, Exploring, volcano, plots
910 days ago
Tags: upset, plots, tools, draw, union, intersect
370 days ago