In a lot of my work in bioinformatics, I have been using hidden Markov models (HMMs). A...s for such things as discriminative estimation of HMMs (refs) and alternative decoding algorithms etc. (refs).
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In our lab, we seek to characterize and to compare genomes in order to better understa...evolutionary processes linking genotypes to phenotypes.
Sequencing and decoding plant genomes have been integ...