Results for "processing"
Top-level pages
...ts, an algorithm is an effective method for solving a problem using a finite sequence of instructions. Algorithms are used for calculation, data processing, and many other fields.Each a...3930 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...hput sequence data. Home Page FASTX-toolkit: FASTQ/A short-reads pre-processing tools Home Page Reference-fr...nd Doerge, SAGMB 10(1), article 26 Full Text Experimental design, preprocessing, normalization and differenti...3763 days ago
Next generation sequencing in R or bioconductor environment
...PseqR: Documentation ChiPsim: Documentation CSAR: Documentation ChIP-Seq Pipeline: PICS, rGADEM and MotIV (developer web site) SPP: ChIP-seq processing pipeline SPP Tutorial MACS...3608 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ntification of somatic point mutations in cancer genomes; requires preprocessing of reads (GATK) Input: same...n realignment around indels-- don’t need to do this type of pre-processing Output: pair of VCF files...2892 days ago
Genome Assembly Tools and Software - PART1 !!
...caffolding TransPS is a pipeline for post-processing of pre-assembled transcriptom...P-Assembler can scales up to 1024 cores when processing Fish and Yanhuang dataset, an...e novo RNA-Seq Assemblies CLEAT is a post-processing tool for CLEavage site Analys...2669 days ago
Awesome perl frameworks, libraries and software - PART 1
...tive speech recognition and text alignment scheme that allows for the processing of very long (and possibly no...ry for creating background jobs, placing them on multiple queues, and processing them later. perl6/specs ...2473 days ago
Tools for bacterial whole genome annotation
...e Automatic Annotation Pipeline (PGAAP; see Pubmed Article) developed in 2005 has been replaced with an upgraded version that is capable of processing a larger data volume. N...2315 days ago
Bioinformatics Web Application Development with Perl
...on (as exemplified by Plack) describes a strategy for building Perl web apps independent of server and with the possibility to share custom processing behaviors. In other words, i...2305 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structured data and is mostly used for pattern scanning and processing. It searches one or more files to see if they cont...2263 days ago
Python learning resources for bioinformatics and computational biologist !
...Case Studies in Python - Tom D. De Smedt (PDF) Natural Language Processing with Python (3.x) Non-P...3.x) Test-Driven Web Development with Python (3.3 - 3.x) Text Processing in Python - David Mertz...2239 days ago
