Results for "program"
Bio-Scripts
Install BLAST in Ubuntu/Linux and Window !
....nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe #Run this installer using the defaults, it should put BLAST under C:\Program Files\NCBI\blast-2.7.1+1130 days ago
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2900 days ago
A multilayer perceptron (MLP) neural network in Perl
...s my @weightsIH; my @weightsHO; main(); #============================================================== #********** THIS IS THE MAIN PROGRAM ************************** #...2899 days ago
Blast result parser with Perl and Bioperl
...query start, query end, hit start, hit end, positives, and identical # The results are tab-deliminated and ready for import into a spreadsheet program for browsing and further anal...2898 days ago
Perl program to implement sliding window !
#!/usr/bin/perl -w my $filename = 'data.txt'; open(my TR, '2898 days ago
- ...and GD.pm, available from CPAN. # For usage information, run this program with the flag # -h. requi...: null -- no title appears If for some reason this program is disrupted during a run, r...
2677 days ago
Genetic Algorithms demonstration with word DNA in Perl
...0; # start with 0 fitness my $max_entry_length = 20; # longest word we accept # you can use any word list at the end of the program # do the @dictionary initi...2355 days ago
Create genome scaffolding with Perl
...$b2) = @_; return((($b1 eq $b2) || ($b1 eq " ") || ($b2 eq " ") || ($b1 eq "N") || ($b2 eq "N")) ? " " : "*"); } ############### Program starts here # set default...2292 days ago
Perl script to convert fastq to fasta file
...fa"; my $infile = shift or die $usage; my $outfile = shift or die $usage; my $factory = Bio::Factory::EMBOSS->new; my $seqret = $factory->program('seqret'); # $seqret is a Bio...2235 days ago
Perl script to find coding regions in DNA sequences
...i < scalar(@codons)) { $r = $r + log($pcodons{$codons[$i]}) - log(1/64); $i = $i + 1; } printf "%.2f\n",$r; __END__ To test the program, save this two files in your...2139 days ago
