Results for "protein"

Tags

  • Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment

    Gblocks eliminates poorly aligned positions and divergent regions of a DNA or protein alignment so that it becomes more suitable for phylogenetic analysis. This server implements the most important features of the Gblocks program to make its use as simple as possible without loosing the func...

    Tags: Gblocks, eliminates, poorly, aligned, positions, divergent, regions, DNA, protein, alignment

    2126 days ago

  • STRUM: structure-based prediction of protein stability changes upon single-point mutation

    STRUM is a method for predicting the fold stability change (ΔΔG) of protein molecules upon single-point nsSNP mutations. STRUM adopts a gradient boosting regression approch to train the Gibbs free-energy changes on a variety of features at different levels of sequence and structure pr...

    Tags: STRUM, structure-based, prediction, protein, stability, changes, single-point, mutation

    2026 days ago

  • FRODOCK 2.0: fast protein–protein docking server

    frodock: a user-friendly protein–protein docking server based on an improved version of FRODOCK that includes a complementary knowledge-based potential. The web interface provides a very effective tool to explore and select protein–protein models and interactively screen them aga...

    Tags: FRODOCK, fast, protein–protein, docking, server, protein

    1989 days ago

  • KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment

    KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene set enrichment(Enrichment module). For Annotate module, it accepts gene list as input, including IDs or sequences, and generates annotations for each gene based on multiple databases about ...

    Tags: KOBAS, web, server, gene, protein, functional, annotation, functional, gene, set, enrichment, KEGG

    1987 days ago

  • List of motif discovery tools !

    In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and has, or is conjectured to have, a biological significance. For proteins, a sequence motif is distinguished from a structural motif, a motif formed by the three-dimensional arrangement of amino ac...

    Tags: motif, discovery, tools, protein, dna

    1955 days ago

  • PhD student / Bio-informatician in computational protein modeling

    PhD student / Bio-informatician in computational protein modeling Job Profile You will perform research on drug/protein interaction analysis in the context of lung cancer, using computational protein modeling. You will implement existing models predicting drug efficacy, related to EGFR-driven c...

    Tags: drug, protein, interaction, modelling

    1495 days ago

  • PPAI: a web server for predicting protein-aptamer interactions

    PPAI can query aptamers and proteins, predict aptamers and predict protein-aptamer interactions in batch mode precisely and efficiently, which would be a novel bioinformatics tool for the research of protein-aptamer interactions. PPAI web-server is freely available at http://39.96.85.9/PPAI

    Tags: PPAI, web, server, predicting, protein, aptamer, interactions

    1385 days ago

  • Caretta – A multiple protein structure alignment and feature extraction suite

    Caretta – a multiple protein structure alignment and feature extraction suite Caretta, a multiple structure alignment suite meant for homologous but sequentially divergent protein families which consistently returns accurate alignments with a higher coverage than current state-of-the-...

    Tags: Caretta, multiple, protein, structure, alignment, feature, extraction, suite

    1196 days ago

  • The CPC sever accepts RNA #transcript sequences as input, and outputs assessed #protein-coding potential of the transcripts. http://cpc2.gao-lab.org/about.php

    Tags: transcript, protein

    864 days ago

  • doubletrouble: identify duplicated genes from whole-genome protein sequences and classify

    doubletrouble aims to identify duplicated genes from whole-genome protein sequences and classify them based on their modes of duplication. The duplication modes are i. segmental duplication (SD); ii. tandem duplication (TD); iii. proximal duplication (PD); iv. transposed duplication (TRD) and; v....

    Tags: doubletrouble, identify, duplicated, genes, whole-genome, protein, sequences, classify

    24 days ago