Results for "putative"
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Tools to detect synteny blocks regions among multiple genomes
...ts between sequences. This software is useful in studying genome duplication and evolution. It can also aid in identifying uncharacterized genes, putative regulatory elements and novel...2595 days ago
List of comparative genomics resources !
...ed non-coding blocks from upstream regions of putative orthologous gene pairs from m...oach to characterize gene models and identify putative cis-regulatory regions of Ref...lusters that each represent a unique known or putative gene) Uprobe -- universa...662 days ago
Bookmarks
- ...ts in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify consensus models of putative interspersed repeats.
2802 days ago
- ...et of DMPs, such as those hits above genome-wide significance threshold in an EWAS study, and analyses whether there is enrichment for overlap of putative functional elements compared...
2731 days ago
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- ...erent assembly pipelines that comprise the SPAdes package and that are used for assembly of metagenomes and transcriptomes as well as assembly of putative plasmids and biosynthetic gen...
809 days ago
Top-level pages
List of In-silico Binding Site Prediction Tools
...D models and related templates with bound ligands in order to identify putative contacting residues. However,...implementation of depth reflects how central a given sub-space is to a putative pocket rather than reflecting...3729 days ago
Commercial and public next-gen-seq (NGS) software
...ewing modes; low or high-depth read pileups; and easy visualization of putative single nucleotide and structu...scoring ChIP-Seq data relative to controls. The first pass identifies putative binding sites and compensates...3504 days ago
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Alien_Hunter : prediction of putative Horizontal Gene Transfer (HGT) events
Alien_hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs). An IVOM approach exploits compositional biases using variable order motif distributions and captures more reliably the local ...Tags: prediction, putative, Horizontal, Gene, Transfer, HGT, events, Alien, Hunter, Alien_hunter
2294 days ago
- A computational pipeline for genome-wide detection of putative horizontal gene transfer (HGT) events based on sequence homology search hit distribution statistics Authors: Qiyun Zhu (qiyunzhu@gmail.com), Katharina Dittmar (katharinad@gmail.com) Affiliation: Department of Biological Sciences, Un...
Tags: HGTector, automated, method, facilitating, genome-wide, discovery, putative, horizontal, gene, transfers
1916 days ago
Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such an informative blog. I notice MCScan is missing. MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify putative homologous chromosomal regions, and align these regions using genes as anchors. More at http://www.ncbi.nlm.nih.gov/pubmed/222176003658 days ago
