Results for "quality"
Bio-Scripts
Estimate Genome Size with Jellyfish and R
...of the k-mer #-s -size=unit32 Hash size / memory allocation #-o -output=string Output file name #--min-quality-char Base quality value. Version 2.2.3 of Jelly...2236 days ago
- ...Formats sequence using base space (default for other than SOLiD). Quality -Q|--offset Offset to use for quality conversion,...
2116 days ago
- ...------------------------------------- Diagnostics and Quality Control: Tools that collect sequencing quality related and comparative metri...pplyBQSR Apply base quality score recalibration Appl...
2065 days ago
Installing pb-assembly on Linux !
...ave been made to ensure that releases on Bioconda live up to the # # quality that PacBio strives for, we m...ave been made to ensure that releases on Bioconda live up to the # # quality that PacBio strives for, we m...2024 days ago
Setting up falconUnzip conda environments for genome assembly !
...ave been made to ensure that releases on Bioconda live up to the # # quality that PacBio strives for, we m...ave been made to ensure that releases on Bioconda live up to the # # quality that PacBio strives for, we m...1980 days ago
- # Convert FASTQ to FASTA seqtk seq -a IN.fastq > OUT.fasta # Convert FASTQ to FASTA and set bases of quality lower than 20 to N seqtk seq -aQ64 -q20 -n N IN.fastq > OUT.fasta # Download Seqtk https://github.com/lh3/seqtk
1716 days ago
Samtools commands for bioinformatician !
...sal_sej.bam | less ### count reads (-c) by flag specified samtool view -c -f 4 sal_sej.bam ### count reads by quality value specified (-q) (>=) # -q : minimal quality value samtools view -q 42 -c...1593 days ago
- ...s for man-db (2.8.3-2ubuntu0.1) ... #MORE at https://vcftools.github.io/perl_module.html # Calculate stats separately for the filter field, quality and non-indels vcf-stats file...
1516 days ago
Tadpole is 250x faster than SPADes assembler !
...red by kmers with count below this will have its quality reduced. markdeltaonly=t...mark bad bases in reads containing errors. markquality=0 (mq) Set quality scor...966 days ago
R script to covert and export html page to png
# Library library(streamgraph) # Create data: data408 days ago
