3909 days ago
Best book Titles for Learning Bionformatics
Nothing can add to our intellect more than reading a book. In books, we can ex...ives and other people’s lives. Reading can make us more intelligent, updated, imaginative. Without reading we wouldn’t know any...Human Molecular Genetics, Andrew P. Read,...3880 days ago
Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specifically designed for quickly manipu...);print}' input.txt OK now here's where to read this stuff properly explained...d some nice explanations of those one-liners. After readi...3875 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...ands-in-vb6/ Fore detail understanding of HMM read this excellent tutorial http:...n.wikipedia.org/wiki/Viterbi_path For firther reading Wiki page http://en.wikipe...en_Markov_model On CpG island paper and for indepth understanding http://www.biom...3787 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in...Compression of DNA sequence reads in FASTQ format. Deorowicz &...FASTX-toolkit: FASTQ/A short-reads pre-processing tools Home Pa...n FM-index of the 1.2 billion reads] Readjoiner: a fast and mem...Microindel detection in short-read...3742 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage...hgri.nih.gov/gasp/GemSIM Next generation sequencing read simulator http://sourceforge....MetaSim A tool to generate collections of synthetic reads...3700 days ago
List of In-silico Binding Site Prediction Tools
...utes the cavities in a given protein. DEPTH: http://mspc.bii.a-star.edu.sg/tankp/run_depth.html Depth measures the clos...ech.edu/findsite FINDSITE is a threading-based binding site predicti...w structure based prediction methods already available, given the complexi...3707 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and utilities which will help yo...For knowledge about Linux and their importance amongst bioinformatician plesae read...3668 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data...ages like GenomicRanges, ShortRead, Rsamtools, etc. Documentatio...C-Seq packages including ShortRead, Rsamtools, rtracklayer, Geno...MotIV: Documentation ShortRead The ShortRead package provid...well as the incorporation of read...3587 days ago
Commercial and public next-gen-seq (NGS) software
...lter snps, do statistics for: reads, contigs and snps. Align/A...AST are designed to map short reads generated with the Illumina...of whole-genome shotgun microreads. ALLPATHS is a whole genome...nd viewing modes; low or high-depth read pileups; and easy visual...3482 days ago