Results for "reading"
Bio-Scripts
Parse a genbank file using regular expressions
#! /usr/local/bin/perl -w $genbank = "genbank_file.txt"; open (GENBANK, $genbank) || die "cannot open $gb_report for reading: $!"; # Flag for multiline translation; 1 means t...2906 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
...install dos2unix [sudo] password for bioqueen: Reading package lists... Done Building dependency tree Reading state information... Done Th...Selecting previously unselected package dos2unix. (Reading database ... 177704 files and...1166 days ago
Install ATOM editor on Elemantory OS / Ubuntu
..../atom-amd64.deb [sudo] password for bioqueen: Reading package lists... Done Building dependency tree Reading state information... Done No...lecting previously unselected package gconf2-common. (Reading database ... 194272 files and...1165 days ago
- #!/usr/local/bin/perl -w # NOTE: YOU MUST CHANGE THE LINE ABOVE TO POINT TO # THE FULL PATH OF THE PERL EXECUTABLE ON YOUR SYSTEM. # System requirements: requires...
2682 days ago
Perl script to find coding regions in DNA sequences
...t(1); } # FASTA format: # >header containing a description of the sequence # AGACTGACTTAC # AGACTGACTTAC # AGACTGAC my $iden = ; # reading the header of the sequence m...2144 days ago
Perl subroutine for reading multifasta file !
sub readfasta { (my $file)=@_; my %sequence; my $header; my $temp_seq; #suppose fasta files contains multiple sequences; open (IN, "2133 days ago
Perl subroutine to read genome/reads fasta file !
sub readSeqFromFasta{ my $file = $_[0]; my (%map,$id,$seq); open(IN,$file) or die("Cannot open file for reading $file:$!\n"); while(){ chomp; if($_ =~ /^>/){ if(defi...2122 days ago
- ...erCoverageStats --reads right.fa --kmers jellyfish.K25.min2.kmers.fa --kmer_size 25 --num_threads 20 --DS > right.fa.K25.stats -reading Kmer occurrences...-reading Kmer occurrences... don...
2116 days ago
Installing Porechop on Ubuntu !
...xt writing top-level names to porechop.egg-info/top_level.txt writing manifest file 'porechop.egg-info/SOURCES.txt' reading manifest file 'porechop.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.i...2095 days ago
Installing Platypus on Ubuntu !
...latypus git:(master) sudo apt-get install python3-dev Reading package lists... Done Building dependency tree Reading state information... Done Th...(Reading database ... 501922 files and...2008 days ago
