Results for "rearrangement"

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  • Reference-free Prediction of Rearrangement Breakpoint Reads http://bioinformatics.oxfordjournals.org/content/early/2014/05/28/bioinformatics.btu360.short #Reference #Breakpoint #Reads #Rearrangement

    Tags: Reference, Breakpoint, Reads, Rearrangement

    3482 days ago

  • svelter

    This software is designed to identify both simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling SVelter.py with proper parameters. It's also possible to ran it on multiple cores by calling different sub-functions separately. More a...

    Tags: Bioinformatics, Computational Biology, Svelter, Rearrangement

    2950 days ago

  • destruct

    Destruct is a tool for joint prediction of rearrangement breakpoints from single or multiple tumour samples. More at https://bitbucket.org/dranew/destruct

    Tags: Bioinformatics, Computational Biology, destruct, Rearrangement, Breakpoint

    2950 days ago

  • COSMIC

    The accurate description and annotation of structural variants can be complex.  This is due to the different resolution that variants are reported from traditional cytogenetic coordinates down to the actual base pair positions. Furthermore, multiple rearrangements in a single area ...

    Tags: Bioinformatics, COSMIC, Chromosome, Cancer, Rearrangement, Breakpoints

    2735 days ago

  • Ribbon !!

    Visualization has played an extremely important role in the current genomic revolution to inspect and understand variants, expression patterns, evolutionary changes, and a number of other relationships. However, most of the information in read-to-reference or genome-genome alignments is lost for ...

    Tags: Bioinformatics, Analysis, NGS, Visualization, Genome, Rearrangement, Ribbon

    2715 days ago

  • Mauve: a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion

    Mauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignments provide a basis for research into comparative genomics and the study of genome-wide evolutionary dynamics. Mauve has be...

    Tags: Bioinformatics, Rearrangement, Mauve, Tool, Alignment

    1933 days ago

  • Synteny and Rearrangement Identifier (SyRI)

    SyRI is a comprehensive tool for predicting genomic differences between related genomes using whole-genome assemblies (WGA). The assemblies are aligned using whole-genome alignment tools, and these alignments are then used as input to SyRI. SyRI identifies syntenic path (longest set of co-linear ...

    Tags: Synteny, Rearrangement, Identifier, SyRI, Genome, Comparative, Genomics

    1423 days ago

  • GRIDSS: the Genomic Rearrangement IDentification Software Suite

    GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina sequencing data. GRIDSS calls variants based on alignment-guided positional de Bruijn gra...

    Tags: GRIDSS, Genomic, Rearrangement, IDentification, Software, Suite

    1411 days ago

  • SLIDESORT-BPR

    Chromosomal rearrangement events are caused by abnormal breaking and rejoining of DNA molecules. They are responsible for many of the cancer related diseases. Detecting the DNA breaking and repairing mechanism, therefore, may offer vital clues about the pathologic causes and diagnostic/therapeuti...

    Tags: Chromosomal, rearrangement, events, abnormal, breaking, DNA, SLIDESORT-BPR

    2320 days ago

  • SVfinder: Tool for detecting genomic rearrangement form DNA-seq data

    SVfinder provides genome-wide detection of structural variants from next generation paired-end sequencing reads.

    Tags: SVfinder, Tool, detecting, genomic, rearrangement, DNA-seq

    2296 days ago