Results for "reconstruction"
Blogs
... ancestral gene/sequence reconstruction/resurrection – is...of Ancestral /sequence/ reconstruction (ASR) tools: infe...ch method could be applied to reconstruction of partial homologous units s...steps of the ancestral genome reconstruction procedure. Ancestors implemen...2515 days ago
List of comparative genomics resources !
...abase of coexpressed gene networks in mammals Find coexpressed gene lists and networks in human and mouse. CVTree -- A Phylogenetic Tree Reconstruction Tool Based on Whole Genomes...662 days ago
Bookmarks
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomic segments at the genome-wide scale. InfoGenomeR inte...1081 days ago
RNA-Seq De novo Assembly Using Trinity
...inity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-se...2950 days ago
- +13 more Bookmarks
Pages
Bio++ : C Language libraries for your biological need
...hood (NNI, including a PhyML-like algorithm).Mixed distance/ML tree reconstruction (iterative approaches).Tree c...ols Parameter estimation under maximum likelihood.Ancestral states reconstructions: Marginal likelihood.(Weight...3932 days ago
Bioinformatics in Africa: Part7 - Tunisia
...sduction pathways and statistical analysis of human sequence variation data (haplotype reconstruction and linkage di...1168 days ago
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...nomic sequences. Trinity 2.1.1 – RNA-Seq De novo Assembly Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Se...2670 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...marcais/Quorum Trowel Software (C++) https://sourceforge.net/projects/trowel-ec/ Metagenomics Assembly-free phylogenomics AAF Phylogeny reconstruction directly from unassembled raw...2356 days ago
- +4 more Top-level pages
News
- ...wer was a female, most likely with dark skin, dark brown hair and blue eyes. https://www.nature.com/articles/s41467-019-13549-9 Artistic reconstruction. (Tom Björklund) More a...
1583 days ago
Opportunity posts
Ph.D. student in Computational Systems Biology
...usually interdisciplinary environment. The Computational Biology Group seeks a highly-skilled Ph.D. student to work on an exciting project on reconstruction and analysis of an integrated...3783 days ago
- ...nal Centre for Genetic Engineering and Biotechnology Area of research: Computational analysis of protein-protein interactions and metabolic reconstruction of pathways Qualification...
2969 days ago
- +2 more Opportunity posts
ResearchLabs posts
- We study mechanisms of cancer evolution by using state-of-the-art genomic approaches at the bench and in analysis. Accurate genome reconstruction is our other major area of interest. We a...
1960 days ago
Tags
DeCoSTAR - Detection of Co-evolution
DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of neighborhood relations -adjacencies- between pairs of ancestral genes or gene domains.Ancestral genes or domains are deduced from reconciled gene trees in a context of birth, speciat...Tags: Bioinformatics, DeCoSTAR, Detection, Co-evolution, Reconstruction, Ancestral, Gene, Genome
2563 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those intervals from their observed adjacencies in modern species. We combine the results from this method with data from chromosome painting experiments to produce a map of an early mammalian genome that accounts fo...Tags: Reconstruction, Contiguous, Regions, Ancestral, Genome, Bioinformatics, CAR
2529 days ago
- +12 more Tags
Comments
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...blocks between (complex) genomes harboring different levels of synteny conservation. Despite a very simple algorithm, the reconstruction is highly congruent with reconstructions obtained with more sophistic...1578 days ago
Comment on "MGRA: Breakpoint graphs and ancestral genome reconstructions"
EAGER: efficient ancient genome reconstruction https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0918-z2460 days ago
- +1 more Comments
