Results for "reconstructions"
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DESCHRAMBLER is shown to produce highly accurate reconstructions using data simulation and by benchmarking it against other reconstruction tools You can find the detail of reconstructed data at http://bioinfo.konkuk.ac.kr/DESCHRAMBLER/2485 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set...2460 days ago
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Evaluation of genome assembly software based on long reads
TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal gen...1903 days ago
Pages
Bio++ : C Language libraries for your biological need
...omogeneous model is supported!Mixed models (beta). Molecular evolution tools Parameter estimation under maximum likelihood.Ancestral states reconstructions: Marginal likelihood.(Weighte...3931 days ago
Top-level pages
Phylogenetic for Bioinformatics
...e Diversity, Classification, and Evolution of Vertebrates:http://academic.emporia.edu/mooredwi/nathist/chap1.htm Algorithms for Phylogenetic Reconstructions:http://lectures.molgen.mpg.de...3930 days ago
Bio-Scripts
Pack a perl program with their dependencies on Ubuntu !
...TGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and a...1495 days ago
Tags
MGRA: Breakpoint graphs and ancestral genome reconstructions
MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of genomes represented as sequences of genes (or synteny blocks) and produces such sequences for ancestral genomes at the in...Tags: MGRA, Breakpoint, graphs, ancestral, genome, reconstructions
2460 days ago
Comments
Comment on "Sibelia: A comparative genomics tool"
...p://bioinf.spbau.ru/sites/default/files/SyntenyFinder.pdf 2. Max A. Alekseyev and Pavel A. Pevzner. "Breakpoint graphs and ancestral genome reconstructions", Genome Res. 2009. 19: 943-9...1268 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...lex) genomes harboring different levels of synteny conservation. Despite a very simple algorithm, the reconstruction is highly congruent with reconstructions obtained with more sophistica...1578 days ago
