Results for "remove"

Tags

  • The syntax to remove last character from line or word is as follows: x="foo bar" echo "${x%?}" #Remove #Last #Bash #Linux

    Tags: Remove, Last, Bash, Linux

    3514 days ago

  • Remove the fasta description and just keep the identifier. perl -p -i -e 's/>(.+?) .+/>$1/g' sample1.fa #Perl #Oneliner #Trick #Tips #Fasta #Identifier #Remove

    Tags: Perl, Oneliner, Trick, Tips, Fasta, Identifier, Remove

    3124 days ago

  • #Remove all line that start with # file: $ sed '/^#/ d' filename #line #sed #linux

    Tags: Remove, line, sed, linux

    2573 days ago

  • Remove four beginning characters from each line of the file. $ sed 's/^....//' genbank.txt #Remove #Sed #Text

    Tags: Remove, Sed, Text

    2469 days ago

  • Remove unwanted character from fasta file. $ sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa #IUPAC #Special #Character #Remove

    Tags: IUPAC, Special, Character, Remove

    2433 days ago

  • #Remove a #sequence by id from multifasta: cat vaga.fa | awk '{if (substr($0,1) == ">scaffold_1 1087316 bp") censor=1; else if (substr($0,1,1) == ">") censor=0; if (censor==0) print $0}' > fixed.fasta

    Tags: Remove, sequence

    2297 days ago

  • Remove the sequence by fasta ids. awk 'BEGIN{while((getline<"ids.txt")>0)l[">"$1]=1}/^>/{f=!l[$1]}f' seq.fa #Remove #Delete #ids #fasta

    Tags: Remove, Delete, ids, fasta

    2173 days ago

  • perl -pe 's/[^AGTC\n]/N/gi unless m/>/;' /media/urbe/TOSHIBALAB/falconUnzip/SSPACED_P2/scaffolds.fasta > /media/urbe/TOSHIBALAB/falconUnzip/SSPACED_P2/scaffolds_corrected.fasta #Remove #Non-ATCG

    Tags: Remove, Non

    2106 days ago

  • #Remove #smartbell from #pacbio #removesmartbell.sh https://github.com/BioInfoTools/BBMap/blob/master/sh/removesmartbell.sh

    Tags: Remove, smartbell, pacbio, removesmartbell

    2066 days ago

  • Remove empty line from fasta. $ sed -i '/^$/d' standard_output.final.scaffolds_online.fasta #Empty #Fasta #Remove

    Tags: Empty, Fasta, Remove

    2015 days ago