Results for "repeats"
Top-level pages
Commercial and public next-gen-seq (NGS) software
...m next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size. It seeks to align reads from nonunique repeats using statistics. From author...3509 days ago
Software packages for next gen sequence analysis
...m next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size. It seeks to align reads from nonunique repeats using statistics. From author...3233 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...put- .aln, .tab, .txt Reference genome in FASTA or GENBANK Output: VntrSeek Description: pipeline for discovering microsatellite tandem repeats with high-throughput sequenci...2899 days ago
Tools for Searching Repeats And Palindromic Sequences
...into five categories: Simple Repeats - Duplications of simple sets...such as A, CA, CGG etc.Tandem Repeats - Typically found at the cent...in the formation of inverted repeats. Assisted by high speed compu...inversions that form inverted repeats that compliment each other. W...2202 days ago
Genome Assembly Tools and Software - PART1 !!
...rs REPdenovo – A tool to Construct Repeats directly from Raw Reads REPdenovo is designed for constructing repeats directly from sequence reads....improve assembly accuracy in the presence of repeats, it constructs the contig seq...2676 days ago
Tools for bacterial whole genome annotation
..., tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transpo...y annotate their genomes and to create genome databases. It identifies repeats, aligns ESTs and proteins to...2322 days ago
Run miniasm assembler on nanopore reads !
...rate is similar to the raw input reads. Find the detail of the reads repeats: fq2fa ONT_A.fastq ONT_A.f...| sort|uniq > invertedrepeat.list Generated a few palindrome and repeats plots (highlighting only repe...2321 days ago
Computational resources for TE discovery and TE detection
...o.lifl.fr/mreps/ PILER http://www.drive5.com/piler/ PLOTREP http://repeats.abc.hu/cgi-bin/plotrep.pl R.../ RepeatRunner http://www.yandell-lab.org/repeat_runner/index.html RepeatScout http://repeatscout.biopro...2264 days ago
Some useful Bioinformatics links
...tics.biomedcentral.com/articles/10.1186/1471-2105-15-211 Palindromic gene amplification — an evolutionarily conserved role for DNA inverted repeats in the genome | Nature Review...2232 days ago
- Types of SSRs (simple sequence repeats), SSRs are short DNA sequences consisting of a tandem repeat of a few nucleotides, typically 2-6 nucleotides in length. Ther...
414 days ago
