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...vailable, pose specific problems. This course addresses the specific strengths and weaknesses of alternative HTS technologies, the computational resources needed for HTS, and how to an...2571 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contiguate...2533 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...bsp;DataBase for automated Carbohydrate-active enzyme ANnotation, funded by the BioEnergy Science Center of the DOE. Similar resources on the web include CAZy...2517 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...h computational efficiency, accessibility, and user experience, so that NGS data can be analyzed efficiently even when only modest computational resources are available. https://webch...2460 days ago
- R learning resources https://flowingdata.com/
2453 days ago
Biological file format tutorial
...here is basic and designed to help users to distinguish the difference between different formats. Please refer user manual or other information resources on web for more details. F...2314 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
...to billions of intervals and is over three orders of magnitude faster than existing methods. Its speed extends the accessibility and utility of resources such as ENCODE, Roadmap Epige...2291 days ago
- scikit-bio is currently in beta. We are very actively developing it, and backward-incompatible interface changes can and will arise. To avoid these types of changes...
2240 days ago
Carefully opt for human reference genome
Heng Li posted several issues with the human reference genomes given in these resources and suggests the following compressed FASTA file to be used as hg38/GRCh38 human reference genom...1521 days ago
CGView - Circular Genome Viewer
...using any web browser, allowing rapid genome browsing, and facilitating data sharing. The feature labels in maps can be hyperlinked to external resources, allowing CGView maps to be i...2129 days ago
