Results for "sam"
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...as Human hg18 (NCBI36) <> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/...2999 days ago
- ...r manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-specs repository. See especially the SAM specification and the VCF spe...
2918 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...data or from public sources) Checking sequence quality, trimming, general sequence manipulation Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualiz...2922 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, sam, bam, primer, tutorial, how-to, i... Updated to use samtools 1.1 and bcftools 1.2.&nb...rimer provides an introduction to SAMtools, and is geared towards t...
2863 days ago
- Decoding SAM flags This utility makes it easy to identify what are the properties of a read based on its SAM flag value, or conversely, to find what the SAM Flag value would be for a giv...
2857 days ago
- ...p;is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Other features includ...
2843 days ago
- ...bsp;<> hg19 (GRCh37), Mouse mm9 (MGSCv37) <> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/...
2790 days ago
BLAST Ring Image Generator (BRIG)
...draft genomes or even raw, unassembled sequence data. BRIG also accepts SAM-formatted read-mapping files...bling genomic regions present in unassembled sequence data from multiple samples to be compared simultaneo...2764 days ago
- ...ence and query sequences, along with any associated variant calls in the sample. This way Ribbon shows pat...d in Supplementary Note 2. Figure 1b shows another complex event in this sample made simple in Ribbon: the...
2744 days ago
- ...ghly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file fo...
2730 days ago
