Results for "sam"
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Comment on "URMAP, an ultra-fast read mapper"
...ome index filename is given by the -ufi option. A filename for SAM format output is specified by -samout. Use /dev/stdout or "-" (m...reate the file. Example urmap -map reads.fastq -ufi hg38.ufi -samout reads.sam1268 days ago
Comment on "Sibelia: A comparative genomics tool"
...variable or input files are in the same folder with "Sibelia" execut...index numbers of sequences (in the same order as they apper in the i...a synteny block. Copies having the same number in the "tag" field (l...gluing "stripes" consisting of the same synteny blocks. For example,...1270 days ago
- ... Show SAM records as pairs. ... samtools [-f INT=0] [-F INT=4] [-...
1505 days ago
Comment on "Learn Genetics Online"
This is one of the best interative genomics tutorial that I found useful. Have a look https://lab.concord.org/embeddable.html#interactives/sam/DNA-to-proteins/1-dna-to-protein.json1543 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...lignment. [100] -S --soft-clip Use soft clipping for supplementary alignment. [false] -C --comment Append FASTQ comment to SAM output. [false] -o --output [STR] Output file (SAM format). [stdout] -h --help...2108 days ago
- ...f data is possible from FastQfiles, BAM or SAM format. This tool provides an...RSeQC, Tophat, STAR, others..) across all samples into a single report. NG...cture and coverage uniformity. The input can be SAM, BAM, FASTA, BED files or Chr...
2122 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...t.fastq \ 20170918_oly_pacbio_minimap_mappings.paf \ 20170918_oly_pacbio_miniasm_assembly.gfa \ 20170918_oly_pacbio_racon1_consensus.fasta from Sam’s Notebook http://ift.t...2152 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...ed, index is generated in the same folder as the reference file...cal Fragment Assembly format. sam - Sequence Alignment/Mapping...s and reference files contain same sequences, and outputs lenie...tes to specify. -b, --verbose-sam INT Helpful debug comments ca...2277 days ago
- SAM file description https://samtools.github.io/hts-specs/SAMv1.pdf
2852 days ago
- SAM flags https://gist.github.com/davfre/8596159
2852 days ago
