Tags: Bioinformatics, NGS, Sequence, Samtools, Primer, Tutorial
2862 days ago
Tags: Bioinformatics, HTSlib, NGS, Samtools, C, Lib
2597 days ago
Unable to index fasta file with samtools !
I am unable to index fasta file with samtools ! It return "different line length in sequence" error message . How to fix it? nc@radha[Downloads] samtools faidx dedup.genome.scf.fasta_assembly.fna [][fai_build_core] different line length in sequence 'jcf7180000001219'.Could not build fai in...Tags: samtools, faidx, index, length, sequence
2240 days ago
Error: Could not find dictionary next to reference file file
htsjdk.samtools.SAMException: Could not find dictionary next to reference file file:///data/sata_data/workshop/wsu29/Parivartan/snakemake_germline_legacy/references/GRCh38.primary_assembly.genome.faTags: dictionary, next, reference, file, samtools, SAMException
1533 days ago
error: mate does not occur next to it in your BAM file. How to fix it ?
*****WARNING: Query v300043428L4C001R0481272249 is marked as paired, but its mate does not occur next to it in your BAM file. Skipping.Tags: samtools, paired, pe, error, mates reads
1453 days ago
How to resolve samtools index error "Chromosome blocks not continuous" ?
samtools index mappedPairs.sorted.bam return the following error ... [bam_sort_core] merging from 0 files and 2 in-memory blocks...[E::hts_idx_push] Chromosome blocks not continuoussamtools index: failed to create index for "mappedPairs.sorted.bam"Tags: samtools, index, sort, bam, reads
986 days ago