Results for "scalable"
Blogs
List of bioinformatics workflow management tools !
...tion for describing analysis workflows and tools that are portable and scalable across a variety of software...led around the UNIX pipe concept, that simplifies writing parallel and scalable pipelines in a portable manne...1133 days ago
Bookmarks
- ...work, we present MEGADOCK 4.0, an FFT-based docking software that makes extensive use of recent heterogeneous supercomputers and shows powerful, scalable performance of over 97% stron...
3549 days ago
- ...exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU hours (42 wall minutes)) scalable (Arbitrarily parallelizable a...
2764 days ago
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Top-level pages
- ...is headed by Prof. Ambuj Singh. There are currently seven graduate students in the research group. Our research focuses on image informatics and scalable querying and mining of graphs...
3937 days ago
Genome Assembly Tools and Software - PART1 !!
...SWAP-Assembler 2 – A scalable and fully parallelized Genome...ta. We present SWAP-Assembler, a scalable and fully parallelized genome...SAT-Assembler 20160120 – Scalable and Accurate Targeted Gene As...FinisherSC is a repeat-aware and scalable tool for upgrading de-novo as...2676 days ago
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Wire posts
News
Roche has acquired Bina Technologies !!!
...t is our shared vision with Roche that informatics and data sciences are critical elements of an end-to-end genomics solution. Fast, easy-to-use, scalable, and robust informatics solut...3404 days ago
ResearchLabs posts
- ...of Computation and Experiments Identification of Biological Networks and Pathways Evaluation and Validation of Computational Predictions Scalable Visualization-Based Data Anal...
3842 days ago
Tags
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying on unique software architecture, PLAST takes full advantage of recent multi-core...Tags: PLAST, fast, accurate, NGS, scalable, bank-to-bank, sequence, similarity, search, tool
2338 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
With increased availability of de novo assembly algorithms, it is feasible to study entire transcriptomes of non-model organisms. While algorithms are available that are specifically designed for performing transcriptome assembly from high-throughput sequencing data, they are very memory-intensiv...Tags: ASplice, scalable, memory-efficient, algorithm, de novo, transcriptome, assembly
2124 days ago
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Comments
Comment on "Nextflow: Data-driven computational pipelines"
A Review of Scalable Bioinformatics Pipelines by Bjørn Fjukstad & Lars Ailo Bongo https://link.springer.com/article/10.1007/s41019-017-0047-z1527 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler) for Next-Generation...cbi.1003737 Software: http://sourceforge.net/projects/sat-assembler/ A Scalable and Accurate Targeted Gene As...2897 days ago
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