Results for "scale"
Users
About me: Hi!My name is Ram Yash Pal. I’m web developer. I have 5+ years of experience on web development, specially on developing large scale web application with complex business logic.My ma...2182 days ago
Blogs
Tools to detect synteny blocks regions among multiple genomes
...s. SyntenyView ( http://www.cbs.dtu.dk/dtucourse/cookbooks/nikob/exercises/gf1_output_5.html), Ensembl 'SyntenyView' shows conservation of large-scale gene order between species pa...2595 days ago
- ...ers to execute sequence analysis with stringent filtering to eliminate false positive and low quality reads. This simplifies the analysis in large scale cohort settings, where every...
2788 days ago
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Bookmarks
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse the large scale genomics datasets. But we need to understand the background...
3930 days ago
Bioinformatics software for biologists in the genomics era
...gator empowerment need to take precedence over the current supposition that biologists should re-tool and become programmers when analyzing genome scale datasets.3771 days ago
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Pages
- ...r Machines VHG Virtural HyperGlossary. Defines terms used in different subfields, currently Glycoscience, Protein Structure. LASSAP a LArge Scale Sequence compArison Package...
3906 days ago
Genome Assembly Tools and Software - PART2 !!
...h; Genome Assembly with Contact Probability MapsLACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. KGB...2670 days ago
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Top-level pages
- ...nd organize the information associated with these molecules, on a large-scale." - By Mark Gerstein, Gerstei...ynamics, no experimental technique can observe it directly on an atomic scale, and motions have to be simul...
3932 days ago
- ...sive efforts to determine the entire DNA sequence of organisms and fine-scale genetic mapping efforts. The...ogical context, linking processes, structure and properties at multiple scales through a materials science...
3927 days ago
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Wire posts
News
- In current era, we are handling huge amount of genomics data, and analysing it to make some biological sense out of it. Large-scale sequence studies requiring BLAST-based analysis pr...
3874 days ago
National Workshop on Data Deluge in Biology: Use of High-Performance Grid & Cloud computing
...this area. Targeted participants are scientists, researchers including Ph.D students and faculty working in biology, genomics, biomedicine, large scale computing and related discipl...3784 days ago
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Opportunity posts
- ...tools developed both in academia and industry. However, this biological information does not equal biological knowledge. As biology becomes large-scale, new methods have to be devel...
3933 days ago
Bioinformatics PhD studentship available in New Zealand
...ry mechanisms of genes and non-coding RNAs, and their influences on different phenotypes and disease states of a cell. Recent shifts towards large-scale analyses of transcriptional r...3933 days ago
- +86 more Opportunity posts
ResearchLabs posts
- Nataša Pržulj Lab's research involves applications of graph theory, mathematical modeling, and computational techniques to solving large-scale problems in computational and systems b...
3886 days ago
- Bioinformatics relevant research topics are: genomic scale studies endogenous mechanisms of mutations, germ line and somatic computational aspects of immunology in cancer sig...
3881 days ago
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Video
Bioinformatics -- Understanding of living systems through information science
...ons that cause cancer, and the genome of the natto production strain Bacillus subtilis. Until now, genome analysis could only be done in national-scale projects. But now, next-gener...3902 days ago
- ...rs, and universities around the world, is dedicated to coordinating efforts in tissue specimen collection that will lay the groundwork for a large-scale sequencing and analysis proje...
3553 days ago
Bio-Scripts
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf # Uses genoPlotR package: http://genoplotr.r-forge.r-project.org...1086 days ago
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman...2890 days ago
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Groups
Awk is widely used these days for extraction and manipulation of large scale biological data in Unix/Linux.Most of the awk code is single liner. Useful Weblinks: http://www.grymoir...3904 days ago
Tags
Comments
Comment on "A quick guide to Phred scaling"
...e of 10 corresponds to a base call accuracy of 90%, while a Phred score of 20 corresponds to a base call accuracy of 99%. Logarithmic scale: The Phred scale is logarithmic, which means t...400 days ago
Comment on "Sibelia: A comparative genomics tool"
...he best choice, but if you do not want to lose information about small-scale rearrangements, use "fine"....uces longer blocks and better coverage, while "fine" can capture small-scale rearrangements, for example,...1270 days ago
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