BOL: Results for "scripts"

Results for "scripts"

- Rahul Nayak@rahul
Estimate Genome Size
# Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2253 days ago
- Jit@jit.aber
Mapping with BWA-mem or BWA-sampe in one go with python script !
...BESST provides a script (https://github.com/ksahlin/BESST/blob/master/scripts/reads_to_ctg_map.py) for obta...ad alignment pipeline. https://github.com/ksahlin/BESST/blob/master/scripts/reads_to_ctg_map.py
2112 days ago
- Jit@jit.aber
Bash script to run Busco2 !
#!/bin/bash #set the path export PATH=$PATH:/home/urbe/Tools/augustus-3.2.3/bin export PATH=$PATH:/home/urbe/Tools/augustus-3.2.3/scripts export AUGUSTUS_CONFIG_PATH=/home/urb...
2126 days ago
- Jit@jit.aber
Installing Platypus on Ubuntu !
...(master) ✗ cd Platypus (py27) ➜ Platypus git:(master) ls Dockerfile extensions LICENSE Makefile misc README.md release sanityChecks.py scripts src test ➜ Platypus git...
2007 days ago