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  • EMBOSS Apps

    The programs are listed in alphabetical order, Look at the individual applications or go to the GROUPS page to search by category. EMBASSY applications are described in separate documentation for each package. Applications in the current release

    2802 days ago

  • Gene Finding and Predictions

    ...erent gene finding approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by signal, content and homolo...

    2772 days ago

  • Entrez Direct: E-utilities on the UNIX Command Line

    ...uite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNIX terminal window. Functions take search terms from command-line argum...

    2718 days ago

  • BioDownloader

    ...ta and very large file sets (~ 10,000 - 100,000). allows the selective retrieval of only the required files (file masks, ls-lR parsing, recursive search, updates) has a built-in rep...

    2589 days ago

  • YASRA: Reference based assembler

    ...enome. Please install LASTZ (the newest version on http://www.bx.psu.edu/~rsharris/lastz/newer) and add the LASTZ binary in your executable/binary search path before installing YASRA.

    2585 days ago

  • DIAMOND

    DIAMOND is a sequence aligner for protein and translated DNA searches and functions as a drop-in replacement for the NCBI BLAST software tools. It is suitable for protein-protein search as well as DNA-protein search...

    2528 days ago

  • Enrichr: a comprehensive gene set enrichment analysis

    ...n programming interface and visualization of the results as clustergrams. Overall, Enrichr is a comprehensive resource for curated gene sets and a search engine that accumulates biolo...

    2528 days ago

  • Tetra-Nucleotide Analysis

    ...agment obtained from a metagenome can be identified by TNA (Teeling et al., 2004). TNA is also fast enough that it can be used as a search engine against a large genome...

    2521 days ago

  • Bio-Graphics-2.37

    ...ably make use of (e.g. transcripts, segments, etc.) and you can try to find a good way of visualization by experimenting with its options. http://search.cpan.org/~lds/Bio-Graphics-2....

    2469 days ago

  • iTOL: Interactive Tree Of Life

    ...directly in the browser, and annotate them with various types of data. iTOL can easily visualize trees with 50'000 or more leaves. With advanced search capabilities and display of u...

    2446 days ago