Most Commonly used Awk by Bioinformatician
...practical cases. Why awk? You can replace a pipeline of 'stuff | grep | sed | cut...' with a single call...input.txt deal with simple CSV: awk -F, '{print $1,$2}' substitution (sed is simpler in this case): aw...3875 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...mapping and assembly of GC-biased genomes. Kozarewa et al, Natu...TileQC: a system for tile-based quality control of Solexa dat...of high-throughput sequence-based experimental data. Carver et...ipting Guide Tutorials for sed, the command-line stream edit...3742 days ago
2836 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long read...30000 AONTself.paf > AONTself30000.eps sed 's/_template_pass_FAH31515//'...20000 AONTself.paf > AONTself20000.eps sed 's/_template_pass_FAH31515//'...2292 days ago
2267 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...ologist and bioinformatician to the frequently used tools for NGS analysis as wel...rom the updatedb command. Much faster than find sed -i 's/day/night/g' file ...night - s means substitude and g means global - sed also supports regular express...2243 days ago
2180 days ago