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Results for "sed"

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• • Jit@jit.aber

  

  #Remove all line that start with # file: $ sed '/^#/ d' filename #line #sed #linux

  Tags: Remove, line, sed, linux

  2600 days ago

• • Rahul Nayak@rahul

  

  Remove "|" from fasta header. $ sed 's,|,_,g' -i file.fa #fasta #header #sed

  Tags: fasta, header, sed

  2472 days ago

• • Surabhi Chaudhary@surabhi

  

  Remove the unwanted characters from Fasta file: sed -e '/^[^>]/s/[^ATGCatgc]/N/g' infile.fa #sed #unwanted #illegal #remove #correct #fasta #linux

  Tags: sed, unwanted, illegal, remove, correct, fasta, linux

  2335 days ago

• • Aaryan Lokwani@aaryan

  

  Sed illegal charters from fasta. $ sed '/^[^>]/ s/[^AGTC]/N/gi' < seq.fa #fasta #otherthanATGC #replace #sed #Linux #illegal

  Tags: fasta, otherthanATGC, replace, sed, Linux, illegal

  2135 days ago

• • Jit@jit.aber

  

  sed -i 's/2019/2020/g' test.txt test2.txt test3.txt #Find #Replace #sed

  Tags: Find, Replace, sed

  760 days ago

• • Jit@jit.aber

  

  Add ">" in front of ids. sed -e 's/^/prefix/' file #Sed #Add #>

  Tags: Sed, Add

  2585 days ago

• • Jit@jit.aber

  

  To clean up a fasta file so only first column of the header is outputted:$ awk '{print $1}' file.fa > output.fa #Sed #Clean #Header #Fasta

  Tags: Sed, Clean, Header, Fasta

  2561 days ago

• • Jit@jit.aber

  

  Append the string to fasta header. $ sed 's/>.*/&_Bacteria/' foo.in > out.fasta #Sed #Fasta #String #Append

  Tags: Sed, Fasta, String, Append

  2503 days ago

• • Jit@jit.aber

  

  Remove four beginning characters from each line of the file. $ sed 's/^....//' genbank.txt #Remove #Sed #Text

  Tags: Remove, Sed, Text

  2496 days ago

• • BioStar@biostar

  

  Enter newline at the end of the file $ sed -i -e '$a\' file #NewLine #Sed #Line #New

  Tags: NewLine, Sed, Line, New

  1343 days ago

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