Results for "seq"
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Next Generation Sequencing (NGS) Tutorials
...Understanding the basics of genome sequencing: Tutorial by Luke Jos...inference.co.uk/blog/2009/04/basics-sequencing-dna-part-1/ http://ww...ng genetic variations using the HugeSeq pipeline DOI: 10.1038/n...oughput analysis of next-generation sequencing data. http://www....3472 days ago
Public Databases for Bioinformatics !
...nt want this to count towards your quote you must chown /mnt/lab_data/$LAB/ lab accessible data should store lab project data here e.g. ATAC-seq prediction data, enhancer pre...1124 days ago
Encode sequencing data freely available to download and use for academic means
...chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription factors, followed by sequencing (ChIP-Seq). More information: https:/...3690 days ago
- "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool link: http://www.cs.cmu.edu/~ckingsf/software/sailfish/
3648 days ago
- RNA Seq Basic Galaxy Tutorial RNA-Seq tutorial based on Trapnell et...anced Galaxy Tutorial RNA-Seq (Advanced) Tutorial In thi...uce graphical output from RNA-Seq analysis previously done usin...g of the raw reads for the subsequent analysis and initial qual...
3638 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotation and metagenomics. However, the construc...3559 days ago
- ...th simple and complex bioinformatics tasks. The next-generation sequencing included whole genome sequencing(WGS), transcriptome se...st generation), Solexa/illumina, SOLiD/ABi, 454/Roche. But thier sequence format is different, als...
3219 days ago
- Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the...ks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building...
2977 days ago
RNA-Seq De novo Assembly Using Trinity
...truction of transcriptomes from RNA-seq data. Trinity combines three..., Chrysalis, and Butterfly, applied sequentially to process large vol...so: Inchworm assembles the RNA-seq data into the unique sequence...ore at https://github.com/trinityrnaseq/trinityrnaseq/wiki ............2950 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...r computing environment Retrieving and storing sequencing files (your own data or from public sources) Checking sequence quality, trimming, gener...of large expression datasets (microarray or RNA-Seq) Microarray Basic analy...2916 days ago
