1350 days ago
2914 days ago
Integrative RNA and ChIP-Seq analysis of regulatory T-cells
Integrative RNA and ChIP-Seq analysis of regulatory T-cells , a Strand NGS applicatio...helper cells. Learn how the gene expression profiles from RNA-Seq and FoxP3 DNA-protein binding sites from ChIP-Seq are integrated. For mor infor...3185 days ago
Calling narrow and broad peaks from ChIP-Seq data
...ks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from ChIP-Seq data in Strand NGS by Rohit G...3185 days ago
Next Generation Sequencing (NGS) Tutorials
...Understanding the basics of genome sequencing: Tutorial by Luke Jos...inference.co.uk/blog/2009/04/basics-sequencing-dna-part-1/ http://ww...ng genetic variations using the HugeSeq pipeline DOI: 10.1038/n...oughput analysis of next-generation sequencing data. http://www....3475 days ago
Public Databases for Bioinformatics !
...nt want this to count towards your quote you must chown /mnt/lab_data/$LAB/ lab accessible data should store lab project data here e.g. ATAC-seq prediction data, enhancer pre...1127 days ago
Genome Assembly Tools and Software - PART2 !!
...to reliably order and orient sequence scaffolds generated by N...SO Regression Approach to RNA-Seq Based Transcriptome AssemblyI...sh; DNA Assembly of the Short Sequences coming from 454 sequenc...rowse interface driven by the Seqfeature database. It accepts b...2674 days ago
Awesome perl frameworks, libraries and software - PART 4
...ar/assemblage - Tools for working with second gen assemblies, fasta sequences, etc obfuscurity/nagio...yogan/cope - A colourful wrapper for terminal programs trinityrnaseq/trinityrnaseq - Trinity...2482 days ago
Bioinformatics Courses Around the World
...se individual research programs. Consequently, we have not included a...ional analysis of biomacromolecular sequences; 2. computational analy...ge, James Bonfield, three-day courseSequencing Project Management Usi...2677 (bioinformatics: computational sequence analysis of biological m...3931 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...nt storage of high throughput sequencing data using reference-b...PubMedCentral Correction of sequencing errors in a mixed set...Comprehensive analysis of RNA-Seq data reveals extensive RNA ed...ery and genetic mapping using sequenced RAD markers. Baird et a...3768 days ago
RNA-Seq Data Pathway and Gene-set Analysis Workflows
...rouwer, 2013) workflows on RNA-Seq data pathway analysis and gen...includes a new tutorial, “RNA-Seq Data Pathway and Gene-set Ana...analysis using one of the major RNA-Seq analysis tools, DEseq/DEseq2,...rial. Although we focus on RNA-Seq data here, but pathway analys...3821 days ago
A powerful, yet simple, gene set analysis tool for interpreting RNA-seq and NGS results.
LifeMap Sciences is introducing GeneAnalytics, our new gene set analysis tool, which is applicable for NGS results and differentially expressed gene lists from v...3463 days ago
Postdoctoral position in bioinformatics @ Sweden
...st-doctoral researcher to work with large-scale sequence data analysis. The posit...lopment for and analysis of next generation DNA sequencing, in particular compara...le data, in particular from next generation DNA sequencing, is highly valued. The...3936 days ago
Clinical Genomics & Informatics Europe at Lisbon, Portugal
...onference will feature four main tracks on Clinical Exome Sequencing, High Scale Computing, Genome Informatics, and RNA-Seq and Transcriptome Analysis, a...hnologies. The conference will tackle the huge amounts of sequencing data produced by new t...3905 days ago
3879 days ago
2951 days ago
Check if your coputer ready to use BioPerl
#!/usr/bin/perl use strict; use warnings; #bioperl example code use strict; use warnings; #make the bioperl module (class) accessible to your program use Bio::Seq; print"ok - ready to use Bio::Seq";2905 days ago
Find and replace ambiguous characters in fasta file with Perl and Bioperl
...ter\n". "Print out the name of sequences with characters other t..."If multiple files are given, sequences in all files are marged..._h)); my $format = "fasta"; my @seqArr = (); @ARGV = ('-') unl...if (defined($opt_m)) { my $seqOut = Bio::SeqIO->new(-fs => \...2902 days ago
3934 days ago
Comment on "Tools for Differential expression analysis"
...expression analysis, including: DESeq2: This R package is widely used for analyzing RNA-Seq data. It uses a negative bino...ression analysis of microarray and RNA-Seq data. It uses a linear model...ifferential expression analysis of RNA-Seq data. It uses a method based...409 days ago
Comment on "Sibelia: A comparative genomics tool"
...t occur exactly once in each input sequence, such blocks are used as...able for analysis. Please note that sequences that do not contain an...he table designate following: 1. Seq_id -- ID of the sequence, tha...at occur exactly once in each input sequence. This option assumes th...1273 days ago