Results for "sequence"
Files
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3856 days ago
- Mostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.
3854 days ago
- ...' [bwa_aln_core] write to the disk... 0.09 sec[bwa_aln_core] 70778880 sequences have been processed.[bwa_aln...sec[bwa_aln_core] write to the disk... 0.06 sec[bwa_aln_core] 70989574 sequences have been processed.[main] V...
2139 days ago
Evaluation of genome assembly software based on long reads
...s of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal genomes, enabling new insights into evolution and sequence diversity. They have also bee...1908 days ago
- perl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.
1629 days ago
