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Results for "sequences"

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• • Rahul Agarwal@raag

  

  VISTA is a comprehensive suite of programs and databases for comparative analysis of genomic sequences !http://genome.lbl.gov/vista/index.shtml #Genomics #Seq

  3503 days ago

• • Jitendra Narayan@admin

  

  Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. https://github.com/lh3/seqtk #FASTA #FASTAQ #NGS

  3613 days ago

• • Jitendra Narayan@admin

  

  Creates 100 random DNA sequences with 20 residues. sapply(1:100, function(x) paste(sample(c("A","T","G","C"), 20, replace=T), collapse="")) #R #Random #Sequence #DNA #Script

  3610 days ago

• • Neelam Jha@neelam

  

  RAMICS substantially outperforms other mapping approaches for alignment of coding DNA to reference sequences. http://hiv.sanbi.ac.za/tools#/ramics #Tools #Alignment #NGS #RAMICS

  3588 days ago

• • Pragati Singh@pragati

  

  transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences http://www.biomedcentral.com/1471-2105/6/156/ #Align #Genome

  3547 days ago

• • Rahul Nayak@rahul

  

  AlienTrimmer: A tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads http://www.sciencedirect.com/science/article/pii/S0888754313001481

  3541 days ago

• • John Parker@parker

  

  MAP2: multiple alignment of syntenic genomic sequences http://nar.oxfordjournals.org/content/33/1/162.full #Alignment #Synteny #Sequence

  3499 days ago

• • Rahul Nayak@rahul

  

  Genomic signature: characterization and classification of species assessed by chaos game representation of sequences. http://www.ncbi.nlm.nih.gov/pubmed/10563018/ #ChaosGame #Genome #Signature

  3438 days ago

• • Rahul Nayak@rahul

  

  Extract sequences by their ID from a fasta file. perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids.txt sample1.fa #Extract #Sequences #IDs #Fasta #Perl #Trick #Oneliner

  3145 days ago

• • Rahul Nayak@rahul

  

  Count the number of sequences in fastaq file. grep -c '^@' sample1.fq #Fastaq #Count #Number #Grep #Dirty #Oneliner #NGS

  3145 days ago

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