Results for "sequencing"
Users
About me: I recently join Bioinformatics as a post grad student. My interest is in genomics and next generation sequencing technologies. I love to explore the area and do my research in it.3347 days ago
- About me: I am bioinformatics research fellow in a ICMR laboratory. " Sequencing costs have plummeted with the help of...ut like BGI’s DNBSEQ-T7 at 60 genomes per day. At the world’s rate of sequencing, we’ll generate 20 ExaBytes o...
645 days ago
- +8 more Users
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...erl - BioPerl core perl moduleslibbio-perl-run-perl - BioPerl wrappers: moduleslibbio-samtools-perl - Perl interface to SamTools library for DNA sequencinglibbiojava-java - Java API to...3935 days ago
Computer simulation of genetic mechanism !!
...to generate synthetic next-generation sequencing data by mimicking real sequencing process with empirical error...ml GemSIM Next generation sequencing read simulator http://sourcef...g whole-genome or whole-exome next-gen sequencing data, with an emphasis on use...2959 days ago
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Bookmarks
Sequencing Solutions to World Health
"New technology that quickly, easily and economically reveals the genomes of viruses and pathogens transforms public health and medicine." Source: Life technologies3886 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
...omparable to existing tools used for bench-marking. We further demonstrate that while existing tools are based on data generated from a specific sequencing technology, the models propos...1131 days ago
- +263 more Bookmarks
Files
- Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. There are multiple signaling pathways responsible for causing cancer amo...
3545 days ago
- Genome sequencing, analysis and expression of Alien genome. Note: This image/cartoon is create only for fun. It has nothing to do with any scientific findings.
3416 days ago
- +1 more Files
Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot...3936 days ago
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3929 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...es Merger for Next Generation SequencingGAM-NGS is able to merge...s as obtained from ultra-deep sequencing of a mixed sample. The packag...ling and scaffolding Illumina sequencing data of microbial communities...nd reads from high throughput sequencing platforms, e.g. Illumina and...2670 days ago
Bioinformatics in Africa: Part2 - Kenya
...aining material. Research Interest and Activities: The following are the present areas of research interest: 1. EST clustering 2. Genome sequencing and annotation 3. Functional...1168 days ago
Top-level pages
- ...me drafts was just a start of the modern DNA sequencing era which resulted in further...w advanced strategies of high-throughput DNA sequencing, so called the “high-th...ncing” (HT-NGS). The decreasing genome sequencing cost and desire to explore an...
3932 days ago
- ...ut the bioinformatics component. The goal of sequencing projects, for example, is not...nalysing sequence data: The primary data of sequencing projects are DNA sequences. T...l. 132:185–219The Genome International Sequencing Consortium (2001) Initial seq...
3932 days ago
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Wire posts
News
- "Ludovic Orlando and Eske Willerslev , Centre for GeoGenetics have beaten sequencing of the ancient DNA record by about 10 times. In collaboration with Dan...
3796 days ago
UK Genome Science Meeting, sept 2nd-4th, 2013
Following the success of the last three years' UK Next Gen Sequencing meetings at Nottingham, the newly named...t and future state of all aspects and applications of Next Generation Sequencing. More at >> http:...3903 days ago
- +36 more News
Opportunity posts
Structural polymorphism analysis from NGS data
...Society, Climate), a network of 13 laboratories of the Paris-Saclay Scientific Cluster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data analysis. In the c...3933 days ago
- ...enerated data that underlies this project consists of high-throughput sequencing of DNA and mRNA of population...are a prerequisite for this position. Experience with high throughput sequencing analysis methods, machine lea...
3933 days ago
- +108 more Opportunity posts
ResearchLabs posts
- ...rch Area: Analysis of Next Generation sequence data in cancer Methods for analysis of structural variation in cancer genomes Next Generation sequencing in malaria Computational com...
3932 days ago
The Ontario Institute for Cancer Research (OICR) Genomics Lab , Toronto, Canada.
...cs to generate high-throughput screens of DNA, RNA, protein, tissue, chemicals and other substances. The genomics platform uses cancer genome sequencing and other high-throughput tec...3904 days ago
- +27 more ResearchLabs posts
Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
...We show how ideas from cutting-edge algorithms, including spectral graph theory and modern data structures, can be used to attack challenges in sequencing, medical genomics and biologi...3886 days ago
- ...thod was used in subsequent years to identify several human disease genes, such as Huntington's and BRCA1. Variations of this method enabled the sequencing phase of the Human Genome Pro...
3857 days ago
- +6 more Video
Bio-Scripts
- ...Tools that process sequencing machine data, e.g. Illumina base calls, and detect sequencing level attributes, e.g. adapte...Collect whole genome sequencing-related metrics. Colle...pected allele fractions in pooled sequencing CalculateGenotypePosteri...
2060 days ago
Bash script to download SRA file !
...sequence data (in paired FASTQ format) from the archive. fastq-dump is in the SRA toolkit. It allows directly downloading data from a particular sequencing run ID fastq-dump --split-...1544 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
...owth area and qualified Bioinformaticians are in high demand. An explosion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques....3401 days ago
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?
Will MinION Nanopore sequencing increase the number of Next Generation Sequencing projects?3182 days ago
Groups
...up aim to provide a social interactive community for python lovers. Python and BioPython tutorial link @ https://sites.google.com/site/seqomics/sequencing/info-seq/python3930 days ago
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic co...3892 days ago
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Tags
Next Generation Sequencing (NGS)
This group meant to discuss different sequencing methods and their data analysis. Now, sequencing is almost one of the most popular technique scientific fraternity pursue worldwide to comprehand the genomic complexity of all the organism and also used to reveal genetic factors responsible for dif...Tags: Sequencing, NGS, Whole genome resequencing, denovo sequencing, exome sequencing, methylated sequencing, RNA sequencing, Bisulfite sequencing, targeted sequencing, Chip-Seq, dRAD and ddRAD sequencing, etc
3892 days ago
Awk is widely used these days for extraction and manipulation of large scale biological data in Unix/Linux.Most of the awk code is single liner. Useful Weblinks: http://www.grymoire.com/Unix/Awk.html http://www.hcs.harvard.edu/~dholland/computers/awk.html http://www.pement.org/awk/awk1line.tx...Tags: awk, gawk, nawk, sed, data, sequencing, one liner
3904 days ago
Comments
Comment on "A quick guide to Phred scaling"
...ystem for representing the quality scores of sequencing reads. It is used to quantify...obability of an error in each base call in a sequencing read. Here is a quick guide t...t, which is a common format used for storing sequencing reads. Each quality score is...400 days ago
Comment on "Short-read assembly using Spades !"
...genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg...reads are of high quality and do not contain sequencing errors or low-quality bases....arch question and the characteristics of the sequencing data....400 days ago
- +73 more Comments
