Results for "shell scripting"
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How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several...cpan-bash: cpan: command not found# perl -MCPAN -e shellCan't locate CPAN.pm in @INC (...-MCPAN -e 'install Bundle::BioPerl'(or)# cpancpan shell --...3931 days ago
- In comparative genome analysis work, we usually compare more than two genomes and lo...test version of the GD module, then it will open a shell and drop you into the build d...Documents and Settings\Owner>ppmPPM interactive shell (2....
3921 days ago
List of bioinformatics workflow management tools !
Here are list of Workflow Managers BigDataScript – A cross-system scripting language for working with big...1124 days ago
How to install Perl modules on Mac OS X in easy steps !!
Today at work, I learned how to install Perl modules using CPAN. It’s a lot easier than I thought. You...ything’s installed correctly. 2) Configure CPAN. $ sudo perl -MCPAN -e shell pe...2735 days ago
Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonstration of the command...r own version of the sotware, you need to tell the shell where the software is located...e are no man pages (those are usually reserved for shell com...2225 days ago
Install ImageMagick from Unix Source
ImageMagick builds on a variety of Unix and Unix-like operating systems including Linux, Solaris, FreeBSD, Mac OS...e.h... time.hchecking for struct tm.tm_zone... yeschecking whether #! works in shell scr...2127 days ago
How to set up SSH on Ubuntu 18.04
SSH, also known as Secure Shell or Secure Socket Shell, is a network protocol that gives users, particularly system administrato...lement the SSH protocol. Here are the commands used to connect by Secure SHell: O...1972 days ago
- ...ng. You can call to it from a shell script, or you can use it as a stand-alone scripting language. Why use AWK in...s # it feel sort of like shell scripting, but to get the same output,...mmon # in UNIX that AWK is a scripting language that does all of it...
1817 days ago
Common Bioinformatics Interview Questions !
The possibility of an interview for a bioinformatics position in the life sciences m...tics come from? How the heck did you end up in this field? Why programming and scripting ? 2. What is your plan for y...1179 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-rela...ajor problem for beginners to execute certain Unix/shell commands in Perl script, so i...nd STDERR. It can also be used with or without the shell. Yo...618 days ago
