Results for "shell scripting"
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Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figure of 1000 completely...ormaticians, so a gap exists between the user-friendly software needed and the scripting/programming infrastructure of...3776 days ago
- ...is tutorial assumes no previous knowledge of scripting or programming, yet progr...nd as a reference and source of knowledge on shell scripting techniques. The exercises and...he premise that the only way to really learn scripting is to write scripts. This bo...
2989 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for...Amplicons Processing Workflow. In Linux, we use a shell that is a program that takes...ng system. Most Linux systems utilize Bourne Again SHell (ba...2864 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox fo...cation and all features are available through menus, toolbars and graphics. No scripting skills required. Powerful. M...
2831 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing fo...available for download and local use for more customized figures and scripting. http://www.e-rna.org/r-chie...
2793 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave th...l course prerequisites, although the course will require familiarity with UNIX scripting and/or programming to complet...2339 days ago
DendroPy: a Python library for phylogenetic computing
DendroPy is a Python library for phylogenetic computing. It provides classes and fun..., a component of more complex multi-library phyloinformatic pipelines, or as a scripting “glue” that assem...2194 days ago
Bioinformatics web development course
This web development course, targeted at Biology and Bioinformatics students, aims a...this tutorial you will learn the fundamental concepts of programming by using scripting languages: variables, types,...1631 days ago
Nextflow: Data-driven computational pipelines
Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages. Its fluent DSL si...1526 days ago
- A lesson introducing the Snakemake workflow system for bioinformatics analysis. Prerequisites This is an inter...rs have already done some bioinformatics: Familiarity with the BASH command shell, in...
717 days ago
