Results for "shell scripting"
Bio-Scripts
# list sample names & download URLs. sample_links = {"ERR458493": "https://osf.io/5daup/download",...download_link = lambda wildcards: sample_links[wildcards.sample] shell: ""...1501 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, download the python source a...of #the system. We are going to update the environment variables to force the shell to...2082 days ago
Bash commandline to install Anaconda !
#The line begins with $ are the commands $ mkdir tmp $ cd tmp/ $ curl -O https...hange /data/sata_data/workshop/wsu29/anaconda3/shell/condabin/Conda.psm1 no change /data/sata_data/workshop/wsu29/anaconda3/shell/con...1540 days ago
Bash command to install Miniconda !
(base) [wsu29@bladeamd-2 tmp]$ wget https://repo.anaconda.com/miniconda/Miniconda3-lat...ange /data/sata_data/workshop/wsu29/miniconda3/shell/condabin/Conda.psm1 no change /data/sata_data/workshop/wsu29/miniconda3/shell/con...1540 days ago
Commands to install conda in Ubuntu !
jit@jit-HP-Pro-3335-MT:~/Downloads$ mkdir jittmp jit@jit-HP-Pro-3335-MT:~/Downloads$ cd jittmp/.../etc/fish/conf.d/conda.fish no change /home/jit/anaconda3/shell/condabin/Conda.psm1 no change /home/jit/anaconda3/shell/con...1496 days ago
- The procedure to find os name and version on Linux: #Open the terminal application (bash shell) #For remote server login using the ssh: ssh user@server-name #Type any one of the following command...
1492 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --->...
1426 days ago
- syntax: $output = open2(\*CHLD_OUT, \*CHLD_IN, 'command arg1 arg2'); It runs a process for both reading and wri...$output = open2(my $out, my $in, 'command arg1 arg2'); OR without using the shell...
1148 days ago
Rules to run fastp / Snakemake !
rule fastp: input: fwd=INPUT + "/{sample}-read_1.fq", rev=INPUT + "/{sample}-read_2.fq"...5 log: RESULTS + "/logs/fastp/{sample}.preprocess.log" shell:...886 days ago
