Results for "shell scripting"
Users
Skills: Shell Scripting3571 days ago
- Skills: shell scripting
9 days ago
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Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several...cpan-bash: cpan: command not found# perl -MCPAN -e shellCan't locate CPAN.pm in @INC (...-MCPAN -e 'install Bundle::BioPerl'(or)# cpancpan shell --...3934 days ago
- In comparative genome analysis work, we usually compare more than two genomes and lo...test version of the GD module, then it will open a shell and drop you into the build d...Documents and Settings\Owner>ppmPPM interactive shell (2....
3923 days ago
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Bookmarks
Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figure of 1000 completely...ormaticians, so a gap exists between the user-friendly software needed and the scripting/programming infrastructure of...3770 days ago
- ...is tutorial assumes no previous knowledge of scripting or programming, yet progr...nd as a reference and source of knowledge on shell scripting techniques. The exercises and...he premise that the only way to really learn scripting is to write scripts. This bo...
2983 days ago
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Pages
Linux SSH Client Commands for Bioinformatics
Here come on let play with the following basic command line usage of the ssh client.1. Check your SSH Client Versi...ollows$ ssh -VOpenSSH_3.9p1, OpenSSL 0.9.7a Feb 19 2013$ ssh -Vssh: SSH Secure Shell 3.2...3689 days ago
Linux Sort Commands for Bioinformatics
Almost all the scripting languages such as Perl, Python etc have built-in sort, but unfortunately none of them are as flexible as sort command. But one when it come to space eff...3610 days ago
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Top-level pages
- The completion of the first human genome drafts was just a start of the modern DNA s...ogical programming languages with their packages/libraries, and assist in your scripting work. Navigate the sub-secti...
3931 days ago
Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specifically designed for quickly manipulating space delimited data....t one-liner for some quick job in the terminal, or build an awk section into a shell scr...3896 days ago
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Wire posts
News
- How to operate blast via shell ? Is any one please tell me how .sh file operate a blast query in blast database
3905 days ago
- R 3.2.0 (codename “Full of Ingredients”) was released yesterday. You can get th...s an object of class "Dlist" and hence prints tidily. (Windows.) shell() no longer consults the environment variable SHELL: to...
3289 days ago
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Opportunity posts
- van Noort Group is looking for PhD fellows We currently access an unprecedented k...analysis methods, machine learning, protein interaction databases, perl/python scripting or BioconductoR are preferred...
3932 days ago
Researcher in computer science/biology
Researcher in Computer Science at the Computational Biology Unit - temporary employm...is of data from high-throughput molecular experiment. Basic programming or scripting skills are required. Experien...3930 days ago
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Video
PHP Tutorial 1 - Introduction (PHP For Beginners)
In this tutorial we go over a short presentation on what PHP is, what is required to...ring further down the line. This video will hopefully introduce you to the PHP scripting language and get you interest...3633 days ago
Bio-Scripts
- # list sample names & download URLs. sample_links = {"ERR458493": "https://osf.io/5daup/download",...download_link = lambda wildcards: sample_links[wildcards.sample] shell: ""...
1500 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, download the python source a...of #the system. We are going to update the environment variables to force the shell to...2082 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...ormatician. :) Can you please describe your research work in a nutshell for BOL users. At my cur...ext generation bioinformaticians? Bioinformatics is not all about scripting and researchers who study in...2346 days ago
Groups
Perl(Practical Extraction and Reporting Language) is a family of high-level, general... Perl was originally developed by Larry Wall in 1987 as a general-purpose Unix scripting language to make report proce...3936 days ago
Python is a programming language that lets you work more quickly and integrate your...ic typing, together with its interpreted nature, make it an ideal language for scripting and rapid application develop...3929 days ago
Tags
- PhD student at University of Gothenburg. Most of my work involves designing or benchmarking pipelines for transcriptome and genomic sequencing data related to epigenetics and cancer.
Skills: R bioconductor, Perl, CGI/Perl, shell scripting, Java, servlet, C, HTML, PHP, CSS, MYSQL, image processing, Matlab, Python, javascript, mathematica
1280 days ago
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