Results for "smith-waterman"

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  • xmatchview: smith-waterman alignment visualization

    xmatchview and xmatchview-conifer are imaging tools for comparing the synteny between DNA sequences. It allows users to align 2 DNA sequences in fasta format using cross_match and displays the alignment in a variety of image formats. xmatchview and xmatchview-conifer are written in python and run...

    Tags: xmatchview, smith-waterman, alignment, visualization, synteny

    2282 days ago

  • Glia: a Graph/Smith-Waterman (partial order) aligner/realigner

    glia's main use is as a local realigner. It will realign reads to a set of known (or putative) variants in a VCF, both consuming and producing an ordered stream of BAM alignments.  More at https://github.com/ekg/glia glia -f ~/human_g1k_v37.fasta -t 20:62900077-62902077 -v variants.vc...

    Tags: Glia, Graph, Smith-Waterman, partial, order, aligner, realigner

    1521 days ago