Results for "split reads"
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Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-nearest neighbor...1136 days ago
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3900 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapp...ediawiki/bfast/index.php?title=Main_Page SHRiMP (for AB SOLiD color-space reads) http://compbio.cs.toronto.e...3887 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also...1209 days ago
- RNA Seq Basic Galaxy Tutorial RNA-S...uman genomic DNA using a small set of reads from chromosome 22. Advanced...es as its input a BAM file of aligned reads and generates a list of likel...such as a quality control of the raw reads, processing of the raw reads...
3643 days ago
Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts...3593 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view severa...les involved in any NGS analysis that employs a reference genome, including how reads from a dataset are mapped, ge...3575 days ago
- Google Genomics provides an API to store, process, explore, and share DNA sequence reads, reference-based alignments,...
3478 days ago
- You are requested to please bookmark collection of bioinformatics tools, scripts, cod...for raw sequence quality analysis and control with few of process for reporting reads quality statistical details,...
3224 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitivi...3215 days ago
