Results for "structural"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...seful in studying genome duplication and evolution. It can also aid in identifying uncharacterized genes, putative regulatory elements and novel structural features of study species by...2600 days ago
Dynamic chromosome breakpoints !!!
...sorders are caused by the loss or gain of whole chromosomes, which affect the copy number of hundreds or even thousands of genes. The second are structural abnormalities which can be un...3542 days ago
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Bookmarks
A Brief Bioinformatics Tutorial
...nt of the homologues you've selected and how to edit this alignment. The Structure part is about molecular visualization, homology modeling and structural domain prediction. In the Fu...3627 days ago
- ...erogeneous supercomputers Summary: The application of protein–protein docking in large-scale interactome analysis is a major challenge in structural bioinformatics and requires h...
3548 days ago
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Files
Bioinformatics approach to Boar Taint
...variant caller tool. A final list of SNPs was prepared after filtering SNPs on the basis of SNP quality, coverage of SNP allele, functional and structural annotation, and repeats, etc....3779 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical membrane protein (MPs) has hindered thus far the development of reliable knowledge –based...3934 days ago
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Pages
Bioinformatics in Africa: Part2 - Kenya
...arch interest: 1. EST clustering 2. Genome sequencing and annotation 3. Functional genomics and proteomics (including key tropical pathogens) 4. Structural bioinformatics 5. Development...1174 days ago
Bioinformatics in Africa: Part7 - Tunisia
...; trained human resources to strengthen bioinformatics capacities at CBS, particularly in structural bioinformatics. Web si...1173 days ago
Top-level pages
- ...owledge in databases, sequence analysis, and structural bioinformatics. Organizing b...developed by the Research Collaboratory for Structural Bioinformatics). Organism spe...of structure determination necessary for the structural genomics projects make an ind...
3937 days ago
List of Bioinformatics and Computational Biology Journals
...Journal of Computational Intelligence in Bioinformatics Journal of Structural and Functional Genomics Jour...Mining and Knowledge Discovery The EMBO Journal Current Opinions in Structural Biology Journal of Molecular...3717 days ago
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Wire posts
News
- ...reated through NCBI research efforts that maps mutations on a protein structural complex, calculates changes i..., identifies deleterious mutations and produces a downloadable mutant structural model. http://www.ncbi.n...
2880 days ago
- ...ex ones involving insertions and deletions are usually missed. With multiple iterations the Strand NGS software is trained to effectively detect structural and copy number changes from...
2299 days ago
Opportunity posts
Structural polymorphism analysis from NGS data
...on, gene/protein expression and phenotypic adaptation. The successful candidate will be in charge of the detection of polymorphisms including structural variants, of the comparison o...3938 days ago
Scientist Fellow-Bioinformatics
...tist Fellow-Bioinformatics(01-Position). Essential Qualifications: Ph.D. in Computational biology/Bioinformatics. Desirable: Experience in structural bioinformatics,network biolog...3934 days ago
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ResearchLabs posts
- ...development of understanding in human disease. Research Area: Analysis of Next Generation sequence data in cancer Methods for analysis of structural variation in cancer genomes...
3938 days ago
- ...ng of efflux systems in Gram-negative bacteria Determinants of the compound-efflux system interactions Action of inhibitors on efflux systems Structural and dynamical features of the...
3859 days ago
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Video
Interview Mark Sansom (U. Oxford): Simulations of Membrane Proteins
...a the Workshop in Bioinformatics. This event addressed issues such as structural bioinformatics, biological mo...data. Professor Mark Sansom (University of Oxford), belonging to the Structural Bioinformatics and Computatio...3853 days ago
Celebrating Crystallography - An animated adventure
...h the 100 year history of crystallography -- from the pioneering work of William and Lawrence Bragg in 1913 to the surface of Mars! Narrated by structural biologist Stephen Curry and p...3463 days ago
Bio-Scripts
- ...(BETA Tool) (Internal) Collects read metrics relevant to structural variant discovery Calcul...-------------------------------------------------------------------- Structural Variant Discovery:...
2065 days ago
Pack a perl program with their dependencies on Ubuntu !
...GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patternsBy Neelam Jha yesterday GSP4PDBwebtoolvisualizesearchexploreprotein-ligandstructuralpatterns gdblab.com -...1501 days ago
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Groups
...apan. BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, tools for structural biology, and other Bioinforma...3910 days ago
Tags
TARDIS: Toolkit for automated and rapid discovery of structural variants
tardis Toolkit for Automated and Rapid DIscovery of Structural variants Requirements zlib (http://www.zlib.net)mrfast (https://github.com/BilkentCompGen/mrfast)htslib (included as submodule; http://htslib.org/)Fetching tardis git clone https://github.com/BilkentCompGen/tardis.git --recursive ...Tags: TARDIS, Toolkit, automated, rapid, discovery, structural, variants
2512 days ago
- Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized indels ...
Tags: Manta, rapid, detection, structural, variants, indels, germline, cancer, sequencing, applications
2159 days ago
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Comments
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end an...lumpy: a general probabilistic framework for structural variant discovery. [ paper-2014 ] manta – Structural variant and indel caller for...1132 days ago
Comment on "List of genome announcement, notes and reporting journals"
Computational and Structural Biotechnology Journal for bioinformatics tool publication1216 days ago
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