Results for "structural and sequence variation"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you nee...le: Go to CPAN Search website and search for the module that yo...it. That will be very painful and annoying task. I recommend th...ssing parameters...CPAN build and cache directory? [/root/.cpan]Down...tlib-perl - library for basic sequence...3933 days ago
Five points for bioinformatics software/tools
...en source, user friendly GUI, and commercial bioinformatics sof...step is the most crucial part and believe to be the biggest bot...open We generally think free and cheap are useless. But this c...ics of programming languages, and if you are not good at it, then pl...is not available to everyone and your...3690 days ago
Tools to detect synteny blocks regions among multiple genomes
...ved by genome rearrangements, and so synteny blocks from two related species (e.g., humans and mice) will be roughly similar...Synteny Browser) is a generic sequence comparison tool for visualizi...d in combination of "synteny" and "ortholog", is designed for the stu...2593 days ago
List of bioinformatics packages for NGS analysis !
Package suites gather software packages and installation tools for specif...lethora of tools for analysis and comprehension of high-through...included cookbook, packaging and thorough documentation. Part...a – Bioinformatics and computational biology infastructur...1125 days ago
List of gene ontology software and tools
...hips between biological terms and and all genes that are instances...bes in a microarray data set, and then applies a cumulative hyp...GOEAST (Institute of Genetics and Developmental Biology, Chines...of GO annotations, mapped to sequence identifiers of your choice. T...nscription factors, signaling and metab...3692 days ago
Dynamic chromosome breakpoints !!!
Cell division involves the distribution of identical genetic material,...frequency in both eukaryotic and prokaryotic cells. But occasi...ands of genes. The second are structural abnormalities which ca...idered as a driver of genetic variation. Moreover, the chromosome bre...3535 days ago
Computer simulation of genetic mechanism !!
...that uses known or theorized variation frequency, per a given fragm...nage SNPs under more flexible and useful settings. If you need model...el-Seq-Gen A biological sequence simulation program that simul...f families for use in Linkage and Association studies. http://dmpi.du...2958 days ago
Tools and Method for Haplotype phasing !
Huge amounts of genotype data are being produced with recent technological a...both from increasingly comprehensive and inexpensive genome-wide SNP microarrays and from ever more accessible who...s co-located on the same chromosome. Since sequence and SNP a...1321 days ago
- ...ion detection, making it fast and cost-effective compared to th...flows with quality assessment and filter sections that do not r...nd NGS allow users to execute sequence analysis with stringent...help to identify copy number variations, split read analysis and breakpoint identification. Finally,...
2786 days ago
Structural variation: the hidden genomic treasure
...cleotide polymorphisms (SNPs) and short indels. Structural Variations (SVs) and Copy Number Variations (CNVs) are a...oaches. The most‐studied structural variants are copy number variations (CNVs) which can be ge...ut became fixed in a species. Structural variation can be neutral but has...2685 days ago
