Results for "structural and sequence variation"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you nee...le: Go to CPAN Search website and search for the module that yo...it. That will be very painful and annoying task. I recommend th...ssing parameters...CPAN build and cache directory? [/root/.cpan]Down...tlib-perl - library for basic sequence...3938 days ago
Five points for bioinformatics software/tools
...en source, user friendly GUI, and commercial bioinformatics sof...step is the most crucial part and believe to be the biggest bot...open We generally think free and cheap are useless. But this c...ics of programming languages, and if you are not good at it, then pl...is not available to everyone and your...3695 days ago
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Bookmarks
Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/download all fasta sequences in single click given that y...$1}}$c?print:chomp;$i{$_}=1 if @ARGV' GIs.txt >sequence....3898 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine,...alysis pipelines Detecting and annotating genetic variations using the HugeSeq pipe...ne for read cleaning, mapping and SNP calling using Next Generation Sequence 10.1186/1471-2164-12-285 A framework for variation discovery and genotyping usin...3475 days ago
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Files
Bioinformatics approach to Boar Taint
Meat products obtained from intact male pigs often produce offens...genetic trait called boar taint.Androstenone and Skatole in the fat prima...47 samples belong to Norwegian Landrace (NL) and Duroc (D) pigs w...ntified QTL regions on SSC5,13, and 7 wi...e of SNP allele, functional and structura...3777 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha h...rect assignment of the buried and lipid-exposed faces of the TM...ross validated test on single sequences, our trans-membrane MM,...ntire topology for 77% of the sequences in a standard dataset of 86 proteins with sup...3933 days ago
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Discussion topics
- The key to finding a solution is to notice that most genomicsequences differ by very little. It may...t the number of complete genome sequences being stored is increasing r...l. In other words, a single DNA sequence isn't particularly compressib...s/181-algorithms/4537-a-new-dna-sequence-...
3908 days ago
Pages
Bio++ : C Language libraries for your biological need
...mes with a genuinely useful standard library that can itself be implemented in C, and it is both efficient and port...the libraries are as follows:Sequence analysis Sequence and Site o...deal with codominant markers and bio-sequence data for individuals....B. Non-homogeneous models of sequence...3936 days ago
BioRuby :Ruby packages for biologist
BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby...University(Bioinformatics Center) and the Open Bio Foundation. The proje...project was started in late 2000, and is st...3935 days ago
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Top-level pages
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan...biological problems using DNA and amino acid sequences and related information...such as determination of DNA and protein sequences, investigation of prote...The SWISS–PROT protein sequence...
3935 days ago
- ...uage.- Alfred North Whitehead and Bertrand Russell in their Pri...kind of algorithm: Divide and conquer A divide and conquer al...e Lectures on Bioinformatics Sequence Alignment Algorithms Algorit...514.html•http://www.cs.brandeis.edu/~mairson/poems/node3.html&b...
3934 days ago
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Wire posts
News
100K Foodborne Pathogen Genome Project
The 100K Genome Project, led by the University of California, Davis, the U.S. Food and Drug Administration’s Center for Food Safety and Applied Nutrition, and Agilen...100K Genome Project, aims to sequence the genomes of 100,000 bacterial and viral...3911 days ago
Prime Minister’s 100k Genome Project
Genomics Ebgland is destined to sequence 100,000 patients over the next five year in England. A landmark project by british government. Genomics England will play a key role in building o...obal race for better tests, better drugs and above...3911 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...ship project aiming at understanding and improving the adaptive capaci...l to establish a link between sequence variation, functional variation, gene/protein expressio...on of polymorphisms including structural variants, of the comparison of multiple and diverse genomes of a same species a...3937 days ago
- van Noort Group is looking for PhD fellows We currently acce...into information by software and tools developed both in acade...gical data becoming available and turn biological information i...r both organisms both natural variatio...-throughput sequencing of DNA and mRNA of populations and isolates. F...
3937 days ago
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ResearchLabs posts
- ...ools for discovery in biology and have accelerated the development of understanding in human disease. Resea...Analysis of Next Generation sequence data in cancer Methods for analysis of structural variation in cancer genomes Next Gene...
3936 days ago
- Our research aims to better understand how living systems respond to...by formal (i.e. machine understandable) semantics to make effectively use of vast and diverse amounts of biomedical...d by genetic and physiological variatio...Research Area the discovery and on-demand use of biomedical data an...
3936 days ago
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Fun
Bioinformatician become producer/director !!!
...ban gaya Genefinder. Har Ligand jo dock karega. Alignment to hona hi tha. Mera sequence mera base. Markov aapke hai...a. BLASTana FASTAna. Hamari Sequence aapke pass hai. BLAST To Hon...Sequence Baarah Hit Tera Ligand Chal Gaya Har Din Jo Modeling Kar...n Karke Dekho Alignment Apna Sequence...3906 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3896 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all human DNA sequences, has highlighted a rese...s inversions, transpositions, and duplications, occur. The genome...ra Lab uses a next-generation sequencer at Keio University, along wi...mutations that cause cancer, and the g...3905 days ago
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Bio-Scripts
R script to visualize fastANI core-genome comparison
####### # Purpose: Visualize fastANI core-genome comparison # Usage: Rscript # Output: .pdf #...noPlotR package: http://genoplotr.r-forge.r-project.org #Parse command line arguments query_fasta=commandArgs(T...1089 days ago
BioPerl to convert between sequence formats from Fasta to Genbank
#!/usr/local/bin/perl -w # Sequence formats to choose: Fasta, EMBL. GenBank, Swissprot, PIR and GCG use Bio::SeqIO; $inFile = "BRCA2.fa"; $in = Bio::SeqIO->newFh('-file' => "$inFile" ,...2904 days ago
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Groups
BioInformatics National Certification (BINC)
BINC (BioInformatics National Certification) is an initiative of Depart...rious Indian universities, Government and private institutions are invo...India. However, there exists a large variatio...the course contents, training period and method of training. Department of B...3911 days ago
Ruby is a dynamic, reflective, general-purpose object-oriented programmi...t was also influenced by Eiffel and Lisp. Ruby was first designed and developed in the mid-1990s by...ith classes for DNA and protein sequence analysis, alignment, database parsing, tools for structural biology, and other...3908 days ago
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Tags
Resolving the complexity of the human genome using single-molecule sequencing
The human genome is arguably the most complete mammalian reference assembly yet more than 160 euchromatic gaps remain and aspects of its structural variation remain poorly understood ten years after its completion. The results in this paper https://www.genomeweb.com/sequencing/team-uses-single-mo...Tags: variants, human reference genome, structural and sequence variation, genome assembly
3208 days ago
