Results for "synteny"
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...or various analyses. It also features three sequence alignment packages: Satsuma, a highly parallelized program for high-sensitivity, genome-wide synteny; Papaya, an all-purpose align...2992 days ago
Ensembl comparative genomics resources
...s pairwise and multiple whole-genome alignments from which large-scale synteny, per-base conservation scores...ies. Specialized web-based visualizations are also available including synteny displays, collapsible gene tr...2972 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then...öldi, J., Di Palma, F., & Lindblad-Toh, K. (2010). Genome-wide synteny through highly sensitive sequ...2898 days ago
- ...novel, self-contained technique named Near HGT, based on the synteny index, to measure the diverge...divergence. A gene exhibiting exceptional deviations according to both synteny and mutability criteria, is c...
2858 days ago
- ...ormation include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny. Home Page: ...
2803 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filteri...2717 days ago
- ...or more DNA sequences. It can be used to identify and analyse regions of similarity and difference between genomes and to explore conservation of synteny, in the context of the entire...
2781 days ago
- ...analyses. It also features three sequence alignment packages: Satsuma, a highly parallelized program for high-sensitivity, genome-wide synteny; Papaya, an all-pur...
2699 days ago
- ...o or three genomes at a time, thus limiting the breadth and the nature of the question that can be investigated. Here we present Genomicus, a new synteny browser that can represent an...
2680 days ago
- ...NGS-based mode) long reads (NGS-based mode) synteny to the genome of some related...g In reference-based mode, pyScaf uses synteny to the genome of closely rela...s.py) as any redundancy will likely break the synteny. pyScaf works better with co...
2677 days ago
