Results for "synteny"

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  • Synteny Portal: a web-based application portal for synteny block analysis

    Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct synteny blocks among multiple species by using prebuilt alignments in the UCSC genome browser database, (ii) visualize and downlo...

    Tags: Synteny, Portal, Web-based, Application, Synteny, Block, Analysis

    2501 days ago

  • DESCHRAMBLER

    DESCHRAMBLER is shown to produce highly accurate reconstructions using data simulation and by benchmarking it against other reconstruction tools You can find the detail of reconstructed data at http://bioinfo.konkuk.ac.kr/DESCHRAMBLER/

    Tags: DESCHRAMBLER, Synteny, Ancestral, Reconstruction, Genome

    2465 days ago

  • orthodotter: Synteny plots (oxford grid)

    orthodotter -h -------------------------------------------------------------------------------- orthodotter - Plot orthologous genes on an oxford grid. -f <file> : input file, containing orthologous genes, default is stdin species chr-name start end spe...

    Tags: orthodotter, Synteny, plots, oxford, grid

    2424 days ago

  • Synima: Synteny Imaging tool

    Synteny Imaging tool (Synima) written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included with the Synima package,...

    Tags: Synima, Synteny, Imaging, tool

    2301 days ago

  • What are the difference between Synteny and Collinearity terms?

    I sometime got confused with Synteny and Collinearity terminology. I am still wondering about the major differences.

    Tags: difference, Synteny, Collinearity

    2283 days ago

  • https://www.r-graph-gallery.com/323-sankey-diagram-with-the-networkd3-library/ #R #Sankey #Diagram #Draw #Connect #Synteny

    Tags: R, Sankey, Diagram, Draw, Connect, Synteny

    2184 days ago

  • VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity

    VGSC, the Vector Graph toolkit of genome Synteny and Collinearity, and its online service, to visualize the synteny and collinearity in the common graphical format, including both raster (JPEG, Bitmap, and PNG) and vector graphic (SVG, EPS, and PDF). 

    Tags: VGSC, Web-Based, Vector, Graph, Toolkit, Genome, Synteny, Collinearity

    1977 days ago

  • Synima: a Synteny imaging tool for annotated genome assemblies

    Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview of genome-wide synteny in PDF. Each of these programs are included with the Synima package, and a pipeline for the...

    Tags: Synima, Synteny, imaging, tool, annotated, genome, assemblies

    1977 days ago

  • #SynCircos draws the interactive #Circos plot by using selected species and chromosomes. http://bioinfo.konkuk.ac.kr/GMASS/htdocs/syncircos.php #Synteny

    Tags: SynCircos, Circos, Synteny

    1700 days ago

  • Deeply conserved synteny resolves early events in vertebrate evolution https://www.nature.com/articles/s41559-020-1156-z #Synteny #Evolution #Vertebrate

    Tags: Synteny, Evolution, Vertebrate

    1435 days ago