Results for "system"
Bio-Scripts
...e instructions, we'll assume your system admins have already installed...hese essentials: # Debian/Ubuntu system admins should run: sudo apt-...nt-dev libxml2-dev # RHEL/CentOS system admins should run: sudo yum...H to use this Perl instead of the system Perl: export PERL5LIB="$PERL...2133 days ago
- #!/usr/local/bin/perl -w # NOTE: YOU MUST CHANGE THE LINE ABOVE TO POINT TO # THE FULL PATH OF THE PERL EXECUTABLE ON YOUR SYSTEM. # System requirements: requires perl and perl modules...
2682 days ago
BASH script for SelfBLAST a genome
#!/bin/bash #self BLAST a genome -- Expecting you have blast and samtools installed in your system #Author: Jitendra Narayan #USAGE: ./selfBlast.sh extract #USAGE: ./selfBlast....2641 days ago
- ...458 scaffold_470 scaffold_480 scaffold_521 scaffold_644); foreach my $i (@ids) { print "Working on $i\n"; mkdir $i; system ("./actor.sh $i"); system ("cp *.* $i"); }
2455 days ago
Perl script to find missing and move to desire folder
#!/usr/bin/perl -w use strict; use warnings; open(my $ids, "2228 days ago
- ...✗ ./configure && make checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu...o 'INSTALL' [nyae]? n checking build system type... x86_64-pc-linux-gnu...options: --with-boost checking build system type... x86_64-pc-linux-gnu...
2140 days ago
Perl script to find the distance beetween all the contigs and scaffolds
...$refSeq->{$chr}{seq}\n>@$SeqIds[$cnt]\n$refSeq->{@$SeqIds[$cnt]}{seq}\n"; close $ofh or die "Could not close file '$tmpFile' $!"; $cnt++; system ("mafft --retree 1 --maxitera...2129 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2129 days ago
Install Parrot Virtual Machine !
...ot Foundation. Hello, I'm Configure. My job is to poke and prod your system to figure out how to build P...y have setenv / unsetenv.........both. auto::timespec - Does your system has timespec....................1526 days ago
- .../Genotyper/Genotyper.cpp:219:22: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(move.c_str());...
2088 days ago
