Results for "system"

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  • Mesquite: A modular system for evolutionary analysis

    Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogenetic multivariate analys...

    Tags: Mesquite, modular, system, evolutionary, analysis

    2446 days ago

  • MUMmer4: A fast and versatile genome alignment system

    MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix array, and that offers improved speed through parallel processing of input query sequences. With a theoretical limi...

    Tags: MUMmer4, fast, versatile, genome, alignment, system

    2246 days ago

  • Mesquite: A modular system for evolutionary analysis

    Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogenetic multivariate analys...

    Tags: Mesquite, modular, system, evolutionary, analysis

    2208 days ago

  • BETSY: A new backward-chaining expert system for automated development of pipelines in Bioinformatics

    The BETSY provides a command-line interface and available at https://github.com/jefftc/changlab. A user first searches in the knowledge base for desired output and then BETSY develops an initial workflow to produce that data which is later examined by the user. The user can optimize the para...

    Tags: BETSY, backward-chaining, expert, system, automated, development, pipelines, Bioinformatics

    1928 days ago

  • ZENBU: a collaborative, omics data integration and interactive visualization system

    ZENBU is a data integration, data analysis, and visualization system enhanced for RNAseq, ChipSeq, CAGE and other types of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data processing and interactive linked-visualizations and is a...

    Tags: ZENBU, collaborative, omics, data, integration, interactive, visualization, system

    1911 days ago

  • CLARK: Fast, accurate and versatile sequence classification system

    CLARK, a method based on a supervised sequence classification using discriminative k-mers. Considering two distinct specific classification problems (see the article for details), namely (1) the taxonomic classification of metagenomic reads to known bacterial genomes, and (2) the assignment ...

    Tags: CLARK, Fast, accurate, versatile, sequence, classification, system, bacteria

    1504 days ago

  • Kubernetes: open-source system for automating deployment, scaling, and management of containerized applications.

    It groups containers that make up an application into logical units for easy management and discovery. Kubernetes builds upon 15 years of experience of running production workloads at Google, combined with best-of-breed ideas and practices from the community.

    Tags: Kubernetes, open-source, system, automating, deployment, scaling, management, containerized, applications.

    1499 days ago

  • Tiara: deep learning-based classification system for eukaryotic sequences

    With a large number of metagenomic datasets becoming available, eukaryotic metagenomics emerged as a new challenge. The proper classification of eukaryotic nuclear and organellar genomes is an essential step toward a better understanding of eukaryotic diversity.

    Tags: Tiara, deep, learning-based, classification, system, eukaryotic, sequences

    745 days ago

  • MOSS: A System for Detecting Software Similarity

    Moss (for a Measure Of Software Similarity) is an automatic system for determining the similarity of programs. To date, the main application of Moss has been in detecting plagiarism in programming classes. Since its development in 1994, Moss has been very effective in this role. The algorithm beh...

    Tags: MOSS, System, Detecting, Software, Similarity, detect, plagiarism, programming

    2302 days ago

  • SIMBA: a Genome Assembly Project Management System

    SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easily and effectively. SIMBA also ...

    Tags: SIMBA, Genome, Assembly, Project, Management, System

    1947 days ago