Results for "tool"
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Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse t...genomics datasets. But we need to understand the background of software/tool to better explain the data co...3935 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
...have evaluated the performance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools used for bench-marking. We f...1136 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...With our new approach we have reduced computation cost forlocal alignment , while achieving accuracy comparable to existingdefacto standard BWA-MEM tool. https://prakharg24.github....1136 days ago
Taverna Workflow Management System
...source domain independent Workflow Management System – a suite of tools used to design and execute s...ote execution of workflows). Taverna is also available as a Command Line Tool for a quick execution of work...3905 days ago
PLOS Computational Biology: Translational Bioinformatics educational resources
...es: “Translational Bioinformatics”. This collection is presented as an online “book” which could serve as a reference tool for a graduate level introduc...3905 days ago
Next Generation Sequencing (NGS) Tutorials
...eration DNA sequencing data PubMed: 21478889 SNiPlay: a web-based tool for detection, management and...quencing data. http://www.ncbi.nlm.nih.gov/pubmed/23657089 GATK: a Toolkit for Genome Analysis h...3477 days ago
Latest paper on comparison of mapping tools
...dag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):1...//bioinformatics.oxfordjournals.org/content/28/24/3169 Some new Mapping tool links: GSNAP http://researc...3886 days ago
Bioinformatics software for biologists in the genomics era
...ion of the fundamental paradigms under which biologist-friendly software tools are designed and developed t...o take precedence over the current supposition that biologists should re-tool and become programmers when a...3776 days ago
- "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool link: http://www.cs.cmu.edu/~ckingsf/software/sailfish/
3653 days ago
Ten recommendations for creating usable bioinformatics command line software
...ies greatly in quality. In terms of usability, the command line interface is the first experience a user will have of a tool. Unfortunately, this is often also the last time a tool will be used. Here I present...3609 days ago
