Results for "tool"

Bio-Scripts

  • Fastq-dump for SRA download

    ...(never|error|always). Default is error --legacy-report use legacy style 'Written spots' for tool ./fastq-dump : 2.9.1 ( 2....

    2115 days ago

  • Installing Porechop on Ubuntu !

    Tools git:(master) ✗ git clone https://github.com/rrwick...869/869), done. Checking connectivity... done. ➜ Tools git:(master) ✗ cd Porechop...IN_SPLIT_READ_SIZE] [-h] [--version] Porechop: a tool for finding adapters in Oxfor...

    2095 days ago

  • Downloading GATK !

    ...[] Usage template for all tools (uses --spark-runner LOCAL when used with a Spark tool) gatk AnyTool toolArgs...Tools that process sequencing mach...(BETA Tool) Generate recalibration table...

    2064 days ago

  • Script to Plot the Coverage

    #!/bin/bash Plot the coverage script chr=$1 start=$2 end=$3 samtools depth deduped_MA605.bam > deduped_MA605.coverage awk '$1 == $chr {print $0}' deduped_MA605.coverage >...

    1992 days ago

  • Pack a perl program with their dependencies on Ubuntu !

    ...to social... Latest bookmarks Neelam Jha@neelam GSP4PDB: a web tool to visualize, search and expl...igand structural patternsBy Neelam Jha yesterday GSP4PDBwebtoolvisualizesearchexploreprotein-...

    1500 days ago

  • Extract the sequence by IDs !

    #This method can be applied directly to FASTA or a FASTQ file, compressed or uncompressed files. Seqtk is a fast and lightweight tool for processing biological data (FASTA/FASTQ). if...

    1391 days ago