Results for "tool"
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Comment on "Short-read assembly using Spades !"
...ersburg genome assembler) is a popular software tool for short-read assembly. Here...bases. This step can be performed using various tools such as Trimmomatic or FastQ...of the assembled genome. This can be done using tools such as QUAST or BUSCO. Thes...405 days ago
- ...There are several tools available for short read sim...icial Read Simulator) is a popular tool for generating synthetic read...SOLiD, and 454. It is a versatile tool that allows users to simulate...es, and coverage levels. The wgsim tool is also open-source and avail...
405 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford...411 days ago
Comment on "Tools for Sequence translation !"
...scriptomic data. There are several tools available for sequence trans..., including: ExPASy Translate Tool: This is a web-based tool tha...SS Transeq: This is a command-line tool that can translate nucleotide...application that provides several tools for sequence analysis, inclu...411 days ago
Comment on "Tools for Differential expression analysis"
...or more conditions or groups. There are several tools available for performing dif...or performing the analysis. Cuffdiff: This tool is a part of the Cufflinks su...These are just a few examples of the many tools available for differential e...411 days ago
Comment on "Tools for RNA classification"
...There are several tools available for RNA classifica...tions. Here are some commonly used tools: Infernal: Infernal is...NAcode is a machine learning-based tool that uses a support vector ma...tRNAscan-SE: tRNAscan-SE is a tool for identifying tRNA genes in...411 days ago
Comment on "Basic command-line to run BLAST"
...y search. BLAST (Basic Local Alignment Search Tool) is a widely used program for...lignment score, identity, and e-value. Overall, BLAST is a powerful tool for searching sequence databa...413 days ago
Comment on "List of genome announcement, notes and reporting journals"
Computational and Structural Biotechnology Journal for bioinformatics tool publication1216 days ago
Comment on "Sibelia: A comparative genomics tool"
...coverage. References ========== 1. Ilya Minkin, Nikolay Vyahhi, Son Pham. "SyntenyFinder: A Synteny Blocks Generation and Genome Comparison Tool" (poster), WABI 2012 http://...1275 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to find explicit errors in the assembly ba...h contig names, but luckily it’s given us a tool to check if things are ok bef...rfect. This should take about a minute. The next tool we need is reapr smaltma...1327 days ago
